Shannan Ho Sui
Shannan Ho Sui
Senior Reseach Scientist, Harvard T.H. Chan School of Public Health
Verified email at
Cited by
Cited by
A promoter-level mammalian expression atlas
Fantom Consortium
Nature 507 (7493), 462, 2014
Whole-genome sequencing and social-network analysis of a tuberculosis outbreak
JL Gardy, JC Johnston, SJH Sui, VJ Cook, L Shah, E Brodkin, S Rempel, ...
New England Journal of Medicine 364 (8), 730-739, 2011
oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes
SJ Ho Sui, JR Mortimer, DJ Arenillas, J Brumm, CJ Walsh, BP Kennedy, ...
Nucleic acids research 33 (10), 3154-3164, 2005
Toward interoperable bioscience data
SA Sansone, P Rocca-Serra, D Field, E Maguire, C Taylor, O Hofmann, ...
Nature genetics 44 (2), 121-126, 2012
Genomic regulatory blocks underlie extensive microsynteny conservation in insects
PG Engström, SJH Sui, Ø Drivenes, TS Becker, B Lenhard
Genome research 17 (12), 1898-1908, 2007
Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response
VD Marks, SJ Ho Sui, D Erasmus, GK Van Der Merwe, J Brumm, ...
FEMS yeast research 8 (1), 35-52, 2008
oPOSSUM: integrated tools for analysis of regulatory motif over-representation
SJ Ho Sui, DL Fulton, DJ Arenillas, AT Kwon, WW Wasserman
Nucleic acids research 35 (suppl_2), W245-W252, 2007
Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency
D Cacchiarelli, C Trapnell, MJ Ziller, M Soumillon, M Cesana, R Karnik, ...
Cell 162 (2), 412-424, 2015
Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation
GL Winsor, R Lo, SJH Sui, KSE Ung, S Huang, D Cheng, WKH Ching, ...
Nucleic acids research 33 (suppl_1), D338-D343, 2005
The association of virulence factors with genomic islands
SJH Sui, A Fedynak, WWL Hsiao, MGI Langille, FSL Brinkman
PloS one 4 (12), e8094, 2009
Cell-specific translational profiling in acute kidney injury
J Liu, AM Krautzberger, SH Sui, OM Hofmann, Y Chen, M Baetscher, ...
The Journal of clinical investigation 124 (3), 1242-1254, 2014
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence
SJH Sui, R Lo, AR Fernandes, MDG Caulfield, JA Lerman, L Xie, ...
International journal of antimicrobial agents 40 (3), 246-251, 2012
Integrated genomic analysis of diverse induced pluripotent stem cells from the progenitor cell biology consortium
N Salomonis, PJ Dexheimer, L Omberg, R Schroll, S Bush, J Huo, ...
Stem cell reports 7 (1), 110-125, 2016
A regulatory toolbox of MiniPromoters to drive selective expression in the brain
E Portales-Casamar, DJ Swanson, L Liu, CN de Leeuw, KG Banks, ...
Proceedings of the National Academy of Sciences 107 (38), 16589-16594, 2010
Epstein− Barr virus-encoded EBNA2 alters immune checkpoint PD-L1 expression by downregulating miR-34a in B-cell lymphomas
E Anastasiadou, D Stroopinsky, S Alimperti, AL Jiao, AR Pyzer, ...
Leukemia 33 (1), 132-147, 2019
Insulin receptor associates with promoters genome-wide and regulates gene expression
ML Hancock, RC Meyer, M Mistry, RS Khetani, A Wagschal, T Shin, ...
Cell 177 (3), 722-736. e22, 2019
Prenatal lead levels, plasma amyloid β levels, and gene expression in young adulthood
M Mazumdar, W Xia, O Hofmann, M Gregas, SH Sui, W Hide, T Yang, ...
Environmental health perspectives 120 (5), 702-707, 2012
A cell atlas of the adult Drosophila midgut
RJ Hung, Y Hu, R Kirchner, Y Liu, C Xu, A Comjean, SG Tattikota, F Li, ...
Proceedings of the National Academy of Sciences 117 (3), 1514-1523, 2020
HIV integration site analysis of cellular models of HIV latency with a probe-enriched next-generation sequencing assay
S Sunshine, R Kirchner, SS Amr, L Mansur, R Shakhbatyan, M Kim, ...
Journal of virology 90 (9), 4511-4519, 2016
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