Oliver Kohlbacher
Oliver Kohlbacher
Professor for Applied Bioinformatics, University of Tübingen
Adresse e-mail validée de uni-tuebingen.de - Page d'accueil
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Charting a dynamic DNA methylation landscape of the human genome
MJ Ziller, H Gu, F Müller, J Donaghey, LTY Tsai, O Kohlbacher, ...
Nature 500 (7463), 477-481, 2013
9442013
OpenMS–an open-source software framework for mass spectrometry
M Sturm, A Bertsch, C Gröpl, A Hildebrandt, R Hussong, E Lange, ...
BMC bioinformatics 9 (1), 163, 2008
8232008
Visualization of omics data for systems biology
N Gehlenborg, SI O'donoghue, NS Baliga, A Goesmann, MA Hibbs, ...
Nature methods 7 (3s), S56, 2010
5842010
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity
M Röttig, MH Medema, K Blin, T Weber, C Rausch, O Kohlbacher
Nucleic acids research 39 (suppl_2), W362-W367, 2011
4602011
Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs)
C Rausch, T Weber, O Kohlbacher, W Wohlleben, DH Huson
Nucleic acids research 33 (18), 5799-5808, 2005
4242005
MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition
A Höglund, P Dönnes, T Blum, HW Adolph, O Kohlbacher
Bioinformatics 22 (10), 1158-1165, 2006
3812006
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells
CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey, A Tsankov, ...
Cell 153 (5), 1149-1163, 2013
3452013
TOPP—the OpenMS proteomics pipeline
O Kohlbacher, K Reinert, C Gröpl, E Lange, N Pfeifer, O Schulz-Trieglaff, ...
Bioinformatics 23 (2), e191-e197, 2007
3052007
Sequence co-evolution gives 3D contacts and structures of protein complexes
TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ...
Elife 3, e03430, 2014
2982014
OptiType: precision HLA typing from next-generation sequencing data
A Szolek, B Schubert, C Mohr, M Sturm, M Feldhahn, O Kohlbacher
Bioinformatics 30 (23), 3310-3316, 2014
2332014
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction
T Blum, S Briesemeister, O Kohlbacher
BMC bioinformatics 10 (1), 274, 2009
2322009
YLoc—an interpretable web server for predicting subcellular localization
S Briesemeister, J Rahnenfï¿ ½hrer, O Kohlbacher
Nucleic acids research 38 (suppl_2), W497-W502, 2010
2252010
Tools for label-free peptide quantification
S Nahnsen, C Bielow, K Reinert, O Kohlbacher
Molecular & Cellular Proteomics 12 (3), 549-556, 2013
2132013
Simultaneous alignment of short reads against multiple genomes
K Schneeberger, J Hagmann, S Ossowski, N Warthmann, S Gesing, ...
Genome biology 10 (9), R98, 2009
2092009
OpenMS: a flexible open-source software platform for mass spectrometry data analysis
HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ...
Nature methods 13 (9), 741, 2016
1972016
The mzIdentML data standard for mass spectrometry-based proteomics results
AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ...
Molecular & Cellular Proteomics 11 (7), 2012
1792012
Reentrant condensation of proteins in solution induced by multivalent counterions
F Zhang, MWA Skoda, RMJ Jacobs, S Zorn, RA Martin, CM Martin, ...
Physical review letters 101 (14), 148101, 2008
1602008
Going from where to why—interpretable prediction of protein subcellular localization
S Briesemeister, J Rahnenführer, O Kohlbacher
Bioinformatics 26 (9), 1232-1238, 2010
1562010
Dissecting neural differentiation regulatory networks through epigenetic footprinting
MJ Ziller, R Edri, Y Yaffe, J Donaghey, R Pop, W Mallard, R Issner, ...
Nature 518 (7539), 355-359, 2015
1392015
WIPI proteins: essential PtdIns3P effectors at the nascent autophagosome
T Proikas-Cezanne, Z Takacs, P Dönnes, O Kohlbacher
Journal of cell science 128 (2), 207-217, 2015
1382015
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