Ali Punjani
Ali Punjani
PhD Candidate, University of Toronto, Vector Institute
Verified email at cs.toronto.edu - Homepage
Title
Cited by
Cited by
Year
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
A Punjani, JL Rubinstein, DJ Fleet, MA Brubaker
Nature methods 14 (3), 290-296, 2017
17992017
Fast search in hamming space with multi-index hashing
M Norouzi, A Punjani, DJ Fleet
2012 IEEE conference on computer vision and pattern recognition, 3108-3115, 2012
2612012
Fast exact search in hamming space with multi-index hashing
M Norouzi, A Punjani, DJ Fleet
IEEE transactions on pattern analysis and machine intelligence 36 (6), 1107-1119, 2013
1752013
Deep learning helicopter dynamics models
A Punjani, P Abbeel
2015 IEEE International Conference on Robotics and Automation (ICRA), 3223-3230, 2015
1482015
Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction
A Punjani, H Zhang, DJ Fleet
Nature methods 17 (12), 1214-1221, 2020
1362020
3D variability analysis: Resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM
A Punjani, DJ Fleet
Journal of Structural Biology 213 (2), 107702, 2021
1072021
Building proteins in a day: Efficient 3D molecular structure estimation with electron cryomicroscopy
A Punjani, MA Brubaker, DJ Fleet
IEEE Transactions on Pattern Analysis and Machine Intelligence 39 (4), 706-718, 2016
292016
Building proteins in a day: Efficient 3D molecular reconstruction
MA Brubaker, A Punjani, DJ Fleet
Proceedings of the IEEE Conference on Computer Vision and Pattern …, 2015
172015
Fast search in hamming space with multi-index hashing
DJ Fleet, A Punjani, M Norouzi
2012 IEEE Conference on Computer Vision and Pattern Recognition, 3108-3115, 2012
172012
Alpha-Beta Divergences Discover Micro and Macro Structures in Data.
KS Narayan, A Punjani, P Abbeel
ICML, 796-804, 2015
82015
3D Flexible Refinement: Structure and Motion of Flexible Proteins from Cryo-EM
A Punjani, DJ Fleet
bioRxiv, 2021
62021
Algorithmic Advances in Single Particle Cryo-EM Data Processing Using CryoSPARC
A Punjani
Microscopy and Microanalysis 26 (S2), 2322-2323, 2020
22020
Protocol for rapid unsupervised cryo-EM structure determination using cryoSPARC software
A Punjani, M Brubaker, J Rubinstein, D Fleet
22017
Microscopic advances with large-scale learning: Stochastic optimization for cryo-EM
A Punjani, MA Brubaker
arXiv preprint arXiv:1501.04656, 2015
22015
Machine learning for helicopter dynamics models
A Punjani, P Abbeel
University of California, Berkeley, 2014
12014
Real-time cryo-EM structure determination
A Punjani
Microscopy and Microanalysis 27 (S1), 1156-1157, 2021
2021
Real-time cryo-EM structure determination for drug discovery
A Punjani
Microscopy and Microanalysis 27 (S1), 2592-2593, 2021
2021
Structural disorder and conformational flexibility in single particle cryo-EM
A Punjani, D Fleet
Foundations of Crystallography 76, a222, 2020
2020
Recent algorithmic advances for single-particle cryo-EM
A Punjani
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 75, A405-A405, 2019
2019
Single-particle CryoEM: Data Processing Techniques for Obtaining Optimal Results
A Punjani
Microscopy and Microanalysis 24 (S1), 2328-2329, 2018
2018
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