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Ricard Argelaguet
Ricard Argelaguet
Altos Labs
Verified email at altoslabs.com - Homepage
Title
Cited by
Cited by
Year
Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets
R Argelaguet, B Velten, D Arnol, S Dietrich, T Zenz, JC Marioni, F Buettner, ...
Molecular systems biology 14 (6), e8124, 2018
8522018
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
SJ Clark, R Argelaguet, CA Kapourani, TM Stubbs, HJ Lee, ...
Nature communications 9 (1), 781, 2018
5942018
MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data
R Argelaguet, D Arnol, D Bredikhin, Y Deloro, B Velten, JC Marioni, ...
Genome biology 21, 1-17, 2020
4462020
Multi-omics profiling of mouse gastrulation at single-cell resolution
R Argelaguet, SJ Clark, H Mohammed, LC Stapel, C Krueger, ...
Nature 576 (7787), 487-491, 2019
3742019
Mendelian randomization
E Birney
Cold Spring Harbor perspectives in medicine, a041302, 2021
2642021
Computational principles and challenges in single-cell data integration
R Argelaguet, ASE Cuomo, O Stegle, JC Marioni
Nature biotechnology 39 (10), 1202-1215, 2021
2602021
Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis
T Lohoff, S Ghazanfar, A Missarova, N Koulena, N Pierson, JA Griffiths, ...
Nature biotechnology 40 (1), 74-85, 2022
204*2022
Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO
B Velten, JM Braunger, R Argelaguet, D Arnol, J Wirbel, D Bredikhin, ...
Nature methods 19 (2), 179-186, 2022
932022
8C-like cells capture the human zygotic genome activation program in vitro
J Taubenschmid-Stowers, M Rostovskaya, F Santos, S Ljung, ...
Cell stem cell 29 (3), 449-459. e6, 2022
852022
Gene regulatory network inference in the era of single-cell multi-omics
P Badia-i-Mompel, L Wessels, S Müller-Dott, R Trimbour, ...
Nature Reviews Genetics 24 (11), 739-754, 2023
822023
Integrative transkingdom analysis of the gut microbiome in antibiotic perturbation and critical illness
BW Haak, R Argelaguet, CM Kinsella, RFJ Kullberg, JM Lankelma, ...
Msystems 6 (2), 10.1128/msystems. 01148-20, 2021
392021
Decoding gene regulation in the mouse embryo using single-cell multi-omics
R Argelaguet, T Lohoff, JG Li, A Nakhuda, D Drage, F Krueger, L Velten, ...
BioRxiv, 2022.06. 15.496239, 2022
272022
scMET: Bayesian modeling of DNA methylation heterogeneity at single-cell resolution
CA Kapourani, R Argelaguet, G Sanguinetti, CA Vallejos
Genome Biology 22, 1-21, 2021
182021
Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis
SJ Clark, R Argelaguet, T Lohoff, F Krueger, D Drage, B Göttgens, ...
Genome biology 23 (1), 202, 2022
142022
Community-wide hackathons to identify central themes in single-cell multi-omics
KA Lê Cao, AJ Abadi, EF Davis-Marcisak, L Hsu, A Arora, A Coullomb, ...
Genome biology 22, 1-21, 2021
122021
Tracking early mammalian organogenesis–prediction and validation of differentiation trajectories at whole organism scale
I Imaz-Rosshandler, C Rode, C Guibentif, LTG Harland, MLN Ton, ...
Development 151 (3), dev201867, 2024
92024
Inter-gastruloid heterogeneity revealed by single cell transcriptomics time course: implications for organoid based perturbation studies
LU Rosen, LC Stapel, R Argelaguet, CG Barker, A Yang, W Reik, ...
bioRxiv, 2022.09. 27.509783, 2022
62022
Curated single cell multimodal landmark datasets for R/Bioconductor
KB Eckenrode, D Righelli, M Ramos, R Argelaguet, C Vanderaa, ...
PLOS Computational Biology 19 (8), e1011324, 2023
32023
Statistical methods for the integrative analysis of single-cell multi-omics data
R Argelaguet
University of Cambridge, 2020
32020
3078–EOMESODERMIN IS A PIVOTAL REGULATOR OF YOLK SAC BLOOD AND ENDOTHELIAL DEVELOPMENT
L Harland, B Theeuwes, A Bisia, ML Ton, R Argelaguet, S Clark, T Lohoff, ...
Experimental Hematology 124, S89, 2023
2023
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Articles 1–20