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Vasavi Sundaram
Vasavi Sundaram
Postdoctoral Fellow, EMBL-EBI
Verified email at ebi.ac.uk
Title
Cited by
Cited by
Year
Widespread contribution of transposable elements to the innovation of gene regulatory networks
V Sundaram, Y Cheng, Z Ma, D Li, X Xing, P Edge, MP Snyder, T Wang
Genome research 24 (12), 1963-1976, 2014
4602014
The human epigenome browser at Washington University
X Zhou, B Maricque, M Xie, D Li, V Sundaram, EA Martin, BC Koebbe, ...
Nature methods 8 (12), 989-990, 2011
3412011
Principles of regulatory information conservation between mouse and human
Y Cheng, Z Ma, BH Kim, W Wu, P Cayting, AP Boyle, V Sundaram, X Xing, ...
Nature 515 (7527), 371-375, 2014
2782014
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
B Zhang, Y Zhou, N Lin, RF Lowdon, C Hong, RP Nagarajan, JB Cheng, ...
Genome research 23 (9), 1522-1540, 2013
2112013
Transposable elements as a potent source of diverse cis-regulatory sequences in mammalian genomes
V Sundaram, J Wysocka
Philosophical Transactions of the Royal Society B 375 (1795), 20190347, 2020
1562020
The epigenomic landscape of transposable elements across normal human development and anatomy
EC Pehrsson, MNK Choudhary, V Sundaram, T Wang
Nature communications 10 (1), 5640, 2019
832019
Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus
V Sundaram, MNK Choudhary, E Pehrsson, X Xing, C Fiore, M Pandey, ...
Nature communications 8 (1), 14550, 2017
762017
Comparative DNA methylome analysis of endometrial carcinoma reveals complex and distinct deregulation of cancer promoters and enhancers
B Zhang, XY Xing, J Li, RF Lowdon, Y Zhou, N Lin, B Zhang, V Sundaram, ...
BMC genomics 15, 1-21, 2014
652014
Transposable Element Mediated Innovation in Gene Regulatory Landscapes of Cells: Re‐Visiting the “Gene‐Battery” Model
V Sundaram, T Wang
Bioessays 40 (1), 1700155, 2018
512018
Recurrent epimutations activate gene body promoters in primary glioblastoma
RP Nagarajan, B Zhang, RJA Bell, BE Johnson, AB Olshen, V Sundaram, ...
Genome research 24 (5), 761-774, 2014
512014
Pervasive lesion segregation shapes cancer genome evolution
SJ Aitken, CJ Anderson, F Connor, O Pich, V Sundaram, C Feig, ...
Nature 583 (7815), 265-270, 2020
442020
Cancer incidence and mortality rates and trends in Trinidad and Tobago
WA Warner, TY Lee, K Badal, TM Williams, S Bajracharya, V Sundaram, ...
BMC cancer 18, 1-12, 2018
312018
Kundaje A, Wang T, Pennacchio LA, Weng Z, Hardison RC, Snyder MP. 2014. Principles of regulatory information conservation between mouse and human
Y Cheng, Z Ma, BH Kim, W Wu, P Cayting, AP Boyle, V Sundaram, X Xing, ...
Nature 515, 371-375, 0
18
The burden of prostate cancer in Trinidad and Tobago: one of the highest mortality rates in the world
WA Warner, TY Lee, F Fang, AAM Llanos, S Bajracharya, V Sundaram, ...
Cancer Causes & Control 29, 685-697, 2018
92018
Strand-resolved mutagenicity of DNA damage and repair
CJ Anderson, L Talmane, J Luft, MD Nicholson, J Connelly, O Pich, ...
Biorxiv, 2022.06. 10.495644, 2022
72022
Functional characterization of enhancer activity during a long terminal repeat's evolution
AY Du, X Zhuo, V Sundaram, NO Jensen, HG Chaudhari, NL Saccone, ...
Genome research 32 (10), 1840-1851, 2022
62022
Integrated quality control of allele-specific copy numbers, mutations and tumour purity from cancer whole genome sequencing assays
J Househam, R Bergamin, S Milite, N Calonaci, A Antonello, MJ Williams, ...
bioRxiv, 2021.02. 13.429885, 2022
52022
The effect of early post hatch feeding times on the growth and development of the gastrointestinal tract of mule ducklings to five days of age
MA Williams, CHO Lallo, V Sundaram
Brazilian Journal of Poultry Science 23, eRBCA-2019-1238, 2021
32021
Evolution of transposable element-derived enhancer activity
AY Du, X Zhuo, V Sundaram, NO Jensen, HG Chaudhari, NL Saccone, ...
bioRxiv, 2022.03. 16.483999, 2022
12022
Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc
A Antonello, R Bergamin, N Calonaci, J Househam, S Milite, MJ Williams, ...
Genome Biology 25 (1), 1-40, 2024
2024
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