Widespread contribution of transposable elements to the innovation of gene regulatory networks V Sundaram, Y Cheng, Z Ma, D Li, X Xing, P Edge, MP Snyder, T Wang Genome research 24 (12), 1963-1976, 2014 | 460 | 2014 |
The human epigenome browser at Washington University X Zhou, B Maricque, M Xie, D Li, V Sundaram, EA Martin, BC Koebbe, ... Nature methods 8 (12), 989-990, 2011 | 341 | 2011 |
Principles of regulatory information conservation between mouse and human Y Cheng, Z Ma, BH Kim, W Wu, P Cayting, AP Boyle, V Sundaram, X Xing, ... Nature 515 (7527), 371-375, 2014 | 278 | 2014 |
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm B Zhang, Y Zhou, N Lin, RF Lowdon, C Hong, RP Nagarajan, JB Cheng, ... Genome research 23 (9), 1522-1540, 2013 | 211 | 2013 |
Transposable elements as a potent source of diverse cis-regulatory sequences in mammalian genomes V Sundaram, J Wysocka Philosophical Transactions of the Royal Society B 375 (1795), 20190347, 2020 | 156 | 2020 |
The epigenomic landscape of transposable elements across normal human development and anatomy EC Pehrsson, MNK Choudhary, V Sundaram, T Wang Nature communications 10 (1), 5640, 2019 | 83 | 2019 |
Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus V Sundaram, MNK Choudhary, E Pehrsson, X Xing, C Fiore, M Pandey, ... Nature communications 8 (1), 14550, 2017 | 76 | 2017 |
Comparative DNA methylome analysis of endometrial carcinoma reveals complex and distinct deregulation of cancer promoters and enhancers B Zhang, XY Xing, J Li, RF Lowdon, Y Zhou, N Lin, B Zhang, V Sundaram, ... BMC genomics 15, 1-21, 2014 | 65 | 2014 |
Transposable Element Mediated Innovation in Gene Regulatory Landscapes of Cells: Re‐Visiting the “Gene‐Battery” Model V Sundaram, T Wang Bioessays 40 (1), 1700155, 2018 | 51 | 2018 |
Recurrent epimutations activate gene body promoters in primary glioblastoma RP Nagarajan, B Zhang, RJA Bell, BE Johnson, AB Olshen, V Sundaram, ... Genome research 24 (5), 761-774, 2014 | 51 | 2014 |
Pervasive lesion segregation shapes cancer genome evolution SJ Aitken, CJ Anderson, F Connor, O Pich, V Sundaram, C Feig, ... Nature 583 (7815), 265-270, 2020 | 44 | 2020 |
Cancer incidence and mortality rates and trends in Trinidad and Tobago WA Warner, TY Lee, K Badal, TM Williams, S Bajracharya, V Sundaram, ... BMC cancer 18, 1-12, 2018 | 31 | 2018 |
Kundaje A, Wang T, Pennacchio LA, Weng Z, Hardison RC, Snyder MP. 2014. Principles of regulatory information conservation between mouse and human Y Cheng, Z Ma, BH Kim, W Wu, P Cayting, AP Boyle, V Sundaram, X Xing, ... Nature 515, 371-375, 0 | 18 | |
The burden of prostate cancer in Trinidad and Tobago: one of the highest mortality rates in the world WA Warner, TY Lee, F Fang, AAM Llanos, S Bajracharya, V Sundaram, ... Cancer Causes & Control 29, 685-697, 2018 | 9 | 2018 |
Strand-resolved mutagenicity of DNA damage and repair CJ Anderson, L Talmane, J Luft, MD Nicholson, J Connelly, O Pich, ... Biorxiv, 2022.06. 10.495644, 2022 | 7 | 2022 |
Functional characterization of enhancer activity during a long terminal repeat's evolution AY Du, X Zhuo, V Sundaram, NO Jensen, HG Chaudhari, NL Saccone, ... Genome research 32 (10), 1840-1851, 2022 | 6 | 2022 |
Integrated quality control of allele-specific copy numbers, mutations and tumour purity from cancer whole genome sequencing assays J Househam, R Bergamin, S Milite, N Calonaci, A Antonello, MJ Williams, ... bioRxiv, 2021.02. 13.429885, 2022 | 5 | 2022 |
The effect of early post hatch feeding times on the growth and development of the gastrointestinal tract of mule ducklings to five days of age MA Williams, CHO Lallo, V Sundaram Brazilian Journal of Poultry Science 23, eRBCA-2019-1238, 2021 | 3 | 2021 |
Evolution of transposable element-derived enhancer activity AY Du, X Zhuo, V Sundaram, NO Jensen, HG Chaudhari, NL Saccone, ... bioRxiv, 2022.03. 16.483999, 2022 | 1 | 2022 |
Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc A Antonello, R Bergamin, N Calonaci, J Househam, S Milite, MJ Williams, ... Genome Biology 25 (1), 1-40, 2024 | | 2024 |