Brejnev Muhire
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RDP4: Detection and analysis of recombination patterns in virus genomes
DP Martin, B Murrell, M Golden, A Khoosal, B Muhire
Virus evolution 1 (1), 2015
SDT: a virus classification tool based on pairwise sequence alignment and identity calculation
BM Muhire, A Varsani, DP Martin
PloS one 9 (9), e108277, 2014
A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae)
B Muhire, DP Martin, JK Brown, J Navas-Castillo, E Moriones, FM Zerbini, ...
Archives of virology 158 (6), 1411-1424, 2013
RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1: vev003
DP Martin, B Murrell, M Golden, A Khoosal, B Muhire
Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context
T Candresse, D Filloux, B Muhire, C Julian, S Galzi, G Fort, P Bernardo, ...
PLoS One 9 (7), e102945, 2014
Detecting and analyzing genetic recombination using RDP4
DP Martin, B Murrell, A Khoosal, B Muhire
Bioinformatics, 433-460, 2017
Methionine metabolism shapes T helper cell responses through regulation of epigenetic reprogramming
DG Roy, J Chen, V Mamane, EH Ma, BM Muhire, RD Sheldon, ...
Cell metabolism 31 (2), 250-266. e9, 2020
Extensive recombination detected among beak and feather disease virus isolates from breeding facilities in Poland
L Julian, T Piasecki, K Chrząstek, M Walters, B Muhire, GW Harkins, ...
Journal of General Virology 94 (5), 1086-1095, 2013
Pervasive tertiary structure in the dengue virus RNA genome
EA Dethoff, MA Boerneke, NS Gokhale, BM Muhire, DP Martin, MT Sacco, ...
Proceedings of the National Academy of Sciences 115 (45), 11513-11518, 2018
Evidence of pervasive biologically functional secondary structures within the genomes of eukaryotic single-stranded DNA viruses
BM Muhire, M Golden, B Murrell, P Lefeuvre, JM Lett, A Gray, AYF Poon, ...
Journal of virology 88 (4), 1972-1989, 2014
Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa
P Bernardo, B Muhire, S François, M Deshoux, P Hartnady, K Farkas, ...
Virology 493, 142-153, 2016
The global distribution of Banana bunchy top virus reveals little evidence for frequent recent, human-mediated long distance dispersal events
D Stainton, DP Martin, BM Muhire, S Lolohea, M Halafihi, P Lepoint, ...
Virus evolution 1 (1), 2015
RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evol. 2015; 1: 1–5
DP Martin, B Murrell, M Golden, A Khoosal, B Muhire
Pigeon circoviruses display patterns of recombination, genomic secondary structure and selection similar to those of beak and feather disease viruses
T Stenzel, T Piasecki, K Chrząstek, L Julian, BM Muhire, M Golden, ...
Journal of General Virology 95 (6), 1338-1351, 2014
Molecular diversity of Chickpea chlorotic dwarf virus in Sudan: High rates of intra-species recombination–a driving force in the emergence of new strains
S Kraberger, SG Kumari, AA Hamed, B Gronenborn, JE Thomas, ...
Infection, Genetics and Evolution 29, 203-215, 2015
Extensive recombination-induced disruption of genetic interactions is highly deleterious but can be partially reversed by small numbers of secondary recombination events
AL Monjane, DP Martin, F Lakay, BM Muhire, D Pande, A Varsani, ...
Journal of virology 88 (14), 7843-7851, 2014
Patterns of recombination in HIV-1M are influenced by selection disfavouring the survival of recombinants with disrupted genomic RNA and protein structures
M Golden, BM Muhire, Y Semegni, DP Martin
PLoS One 9 (6), e100400, 2014
Chromatin restriction by the nucleosome remodeler Mi-2β and functional interplay with lineage-specific transcription regulators control B-cell differentiation
T Yoshida, Y Hu, Z Zhang, AO Emmanuel, K Galani, B Muhire, ...
Genes & development 33 (13-14), 763-781, 2019
Recombinant goose circoviruses circulating in domesticated and wild geese in Poland
T Stenzel, D Dziewulska, BM Muhire, P Hartnady, S Kraberger, DP Martin, ...
Viruses 10 (3), 107, 2018
The influence of secondary structure, selection and recombination on r ubella virus nucleotide substitution rate estimates
LJ Cloete, EP Tanov, BM Muhire, DP Martin, GW Harkins
Virology journal 11 (1), 1-12, 2014
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Articles 1–20