Darren Martin
Cited by
Cited by
RDP4: Detection and analysis of recombination patterns in virus genomes
DP Martin, B Murrell, M Golden, A Khoosal, B Muhire
Virus evolution 1 (1), 2015
RDP3: a flexible and fast computer program for analyzing recombination
DP Martin, P Lemey, M Lott, V Moulton, D Posada, P Lefeuvre
Bioinformatics 26 (19), 2462-2463, 2010
RDP: detection of recombination amongst aligned sequences
D Martin, E Rybicki
Bioinformatics 16 (6), 562-563, 2000
Detection of a SARS-CoV-2 variant of concern in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592, 438 - 443, 2021
RDP2: recombination detection and analysis from sequence alignments
DP Martin, C Williamson, D Posada
Bioinformatics 21 (2), 260-262, 2005
SDT: a virus classification tool based on pairwise sequence alignment and identity calculation
BM Muhire, A Varsani, DP Martin
PloS one 9 (9), e108277, 2014
A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
DP Martin, D Posada, KA Crandall, C Williamson
AIDS Research & Human Retroviruses 21 (1), 98-102, 2005
The phylogenetic handbook: a practical approach to phylogenetic analysis and hypothesis testing
AMV M Salemi, P Lemey
The phylogenetic handbook, 2009
Revision of Begomovirus taxonomy based on pairwise sequence comparisons
JK Brown, FM Zerbini, J Navas-Castillo, E Moriones, R Ramos-Sobrinho, ...
Archives of virology 160 (6), 1593-1619, 2015
ICTV virus taxonomy profile: Geminiviridae
FM Zerbini, RW Briddon, A Idris, DP Martin, E Moriones, J Navas-Castillo, ...
The Journal of general virology 98 (2), 131, 2017
Recombination patterns in aphthoviruses mirror those found in other picornaviruses
L Heath, E Van Der Walt, A Varsani, DP Martin
Journal of virology 80 (23), 11827-11832, 2006
Gene-wide identification of episodic selection
B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ...
Molecular biology and evolution 32 (5), 1365-1371, 2015
The spread of tomato yellow leaf curl virus from the Middle East to the world
P Lefeuvre, DP Martin, G Harkins, P Lemey, AJA Gray, S Meredith, ...
PLoS pathogens 6 (10), e1001164, 2010
Enabling the genomic revolution in Africa
THA Consortium
Science 344 (6190), 1346-1348, 2014
Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus
A Varsani, J Navas-Castillo, E Moriones, C Hernández-Zepeda, A Idris, ...
Archives of virology 159 (8), 2193-2203, 2014
Plant virus metagenomics: advances in virus discovery
MJ Roossinck, DP Martin, P Roumagnac
Phytopathology 105 (6), 716-727, 2015
A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae)
B Muhire, DP Martin, JK Brown, J Navas-Castillo, E Moriones, FM Zerbini, ...
Archives of virology 158 (6), 1411-1424, 2013
Widely conserved recombination patterns among single-stranded DNA viruses
P Lefeuvre, JM Lett, A Varsani, DP Martin
Journal of virology 83 (6), 2697-2707, 2009
Capulavirus and Grablovirus: two new genera in the family Geminiviridae
A Varsani, P Roumagnac, M Fuchs, J Navas-Castillo, E Moriones, A Idris, ...
Archives of Virology 162 (6), 1819-1831, 2017
Robust inference of positive selection from recombining coding sequences
K Scheffler, DP Martin, C Seoighe
Bioinformatics 22 (20), 2493-2499, 2006
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