| Integrating multi-network topology for gene function prediction using deep neural networks J Peng*, H Xue*, Z Wei, I Tuncali, J Hao, X Shang Briefings in bioinformatics 22 (2), 2096-2105, 2021 | 78 | 2021 |
| Modeling dynamic heterogeneous network for link prediction using hierarchical attention with temporal rnn H Xue, L Yang, W Jiang, Y Wei, Y Hu, Y Lin Machine Learning and Knowledge Discovery in Databases: European Conference …, 2021 | 67 | 2021 |
| A novel method to measure the semantic similarity of HPO terms J Peng, H Xue, Y Shao, X Shang, Y Wang, J Chen International Journal of Data Mining and Bioinformatics 17 (2), 173-188, 2017 | 51 | 2017 |
| Predicting disease-related genes using integrated biomedical networks J Peng, K Bai, X Shang, G Wang, H Xue, S Jin, L Cheng, Y Wang, J Chen BMC Genomics 18 (1), 1-11, 2017 | 49 | 2017 |
| Multiplex bipartite network embedding using dual hypergraph convolutional networks H Xue, L Yang, V Rajan, W Jiang, Y Wei, Y Lin Proceedings of the Web Conference 2021, 1649-1660, 2021 | 26 | 2021 |
| Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on HPO H Xue, J Peng, X Shang BMC Systems Biology 13 (2), 34, 2019 | 19 | 2019 |
| An online tool for measuring and visualizing phenotype similarities using HPO J Peng*, H Xue*, W Hui, J Lu, B Chen, Q Jiang, X Shang, Y Wang BMC Genomics 19 (6), 185, 2018 | 14 | 2018 |
| Towards gene function prediction via multi-networks representation learning H Xue, J Peng, X Shang Proceedings of the AAAI Conference on Artificial Intelligence 33 (01), 10069 …, 2019 | 11* | 2019 |
| RepBin: constraint-based graph representation learning for metagenomic binning H Xue, V Mallawaarachchi, Y Zhang, V Rajan, Y Lin Proceedings of the AAAI Conference on Artificial Intelligence 36 (4), 4637-4645, 2022 | 10 | 2022 |
| Predicting the Disease Genes of Multiple Sclerosis Based on Network Representation Learning H Liu, J Guan, H Li, Z Bao, Q Wang, X Luo, H Xue Frontiers in Genetics 11, 2020 | 10 | 2020 |
| TS-GOEA: a web tool for tissue-specific gene set enrichment analysis based on gene ontology J Peng, G Lu, H Xue, T Wang, X Shang BMC Bioinformatics 20 (18), 1-7, 2019 | 9 | 2019 |
| Measuring phenotype semantic similarity using human phenotype ontology J Peng, H Xue, Y Shao, X Shang, Y Wang, J Chen 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016 | 7 | 2016 |
| Integrating multi-network topology via deep semi-supervised node embedding H Xue, J Peng, J Li, X Shang Proceedings of the 28th ACM International Conference on Information and …, 2019 | 5 | 2019 |
| Graph coloring via neural networks for haplotype assembly and viral quasispecies reconstruction H Xue, V Rajan, Y Lin Advances in Neural Information Processing Systems 35, 30898-30910, 2022 | 3 | 2022 |
| TSGOE: A web tool for tissue-specific gene ontology enrichment analysis J Peng, G Lu, H Xue, T Wang, X Shang 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018 | 1 | 2018 |
| Personalised Drug Identifier for Cancer Treatment with Transformers using Auxiliary Information A Jayagopal, H Xue, Z He, RJ Walsh, KK Hariprasannan, DSP Tan, ... arXiv preprint arXiv:2402.10551, 2024 | | 2024 |
| Encoding Unitig-level Assembly Graphs with Heterophilous Constraints for Metagenomic Contigs Binning H Xue, V Mallawaarachchi, L Xie, V Rajan The Twelfth International Conference on Learning Representations, 2023 | | 2023 |
Yu LinSchool of Computing, Australian National UniversityVerified email at anu.edu.au
