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Francesco Paolo Casale
Francesco Paolo Casale
Helmholtz Pioneer Campus, Institute of AI for Health, Helmholtz Zentrum München
Verified email at helmholtz-muenchen.de - Homepage
Title
Cited by
Cited by
Year
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
23822015
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ...
Nature biotechnology 33 (2), 155-160, 2015
12272015
Genetic drivers of epigenetic and transcriptional variation in human immune cells
L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ...
Cell 167 (5), 1398-1414. e24, 2016
6572016
Common genetic variation drives molecular heterogeneity in human iPSCs
H Kilpinen, A Goncalves, A Leha, V Afzal, K Alasoo, S Ashford, S Bala, ...
Nature 546 (7658), 370-375, 2017
5892017
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, ...
elife 4, e05255, 2015
4832015
Gaussian process prior variational autoencoders
FP Casale, A Dalca, L Saglietti, J Listgarten, N Fusi
Advances in neural information processing systems 31, 2018
1312018
A linear mixed-model approach to study multivariate gene–environment interactions
R Moore, FP Casale, M Jan Bonder, D Horta, L Franke, I Barroso, ...
Nature genetics 51 (1), 180-186, 2019
1262019
LIMIX: genetic analysis of multiple traits
C Lippert, FP Casale, B Rakitsch, O Stegle
BioRxiv, 003905, 2014
1202014
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18, 1-17, 2017
1162017
Efficient set tests for the genetic analysis of correlated traits
FP Casale, B Rakitsch, C Lippert, O Stegle
Nature methods 12 (8), 755-758, 2015
1122015
Genetic variation in the social environment contributes to health and disease
A Baud, MK Mulligan, FP Casale, JF Ingels, CJ Bohl, J Callebert, ...
PLoS genetics 13 (1), e1006498, 2017
872017
Probabilistic neural architecture search
FP Casale, J Gordon, N Fusi
arXiv preprint arXiv:1902.05116, 2019
812019
Promoter shape varies across populations and affects promoter evolution and expression noise
IE Schor, JF Degner, D Harnett, E Cannavň, FP Casale, H Shim, ...
Nature genetics 49 (4), 550-558, 2017
722017
Genetic variants regulating expression levels and isoform diversity during embryogenesis
E Cannavň, N Koelling, D Harnett, D Garfield, FP Casale, L Ciglar, ...
Nature 541 (7637), 402-406, 2017
612017
The germline genetic component of drug sensitivity in cancer cell lines
MP Menden, FP Casale, J Stephan, GR Bignell, F Iorio, U McDermott, ...
Nature communications 9 (1), 3385, 2018
422018
Joint genetic analysis using variant sets reveals polygenic gene-context interactions
FP Casale, D Horta, B Rakitsch, O Stegle
PLoS genetics 13 (4), e1006693, 2017
242017
Interactions between genetic variation and cellular environment in skeletal muscle gene expression
DL Taylor, DA Knowles, LJ Scott, AH Ramirez, FP Casale, BN Wolford, ...
PLoS One 13 (4), e0195788, 2018
222018
DNA methylation in
MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, ...
Arabidopsis, 2015
172015
Dissecting indirect genetic effects from peers in laboratory mice
A Baud, FP Casale, AM Barkley-Levenson, N Farhadi, C Montillot, ...
Genome biology 22, 1-21, 2021
82021
Genome-wide association study of social genetic effects on 170 phenotypes in laboratory mice
A Baud, FP Casale, J Nicod, O Stegle
BioRxiv, 2018
8*2018
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Articles 1–20