Aurélien Mazurie

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Florence d'Alché-BucTélécom Paris, Institut Polytechnique de ParisVerified email at telecom-paris.fr
Liva RalaivolaCriteo AI LabVerified email at criteo.com
Bridget M. BarkerNorthern Arizona University, Department of Biological Sciences, Pathogen and Microbiome InstituteVerified email at nau.edu
Robert A CramerDartmouth Geisel School of MedicineVerified email at dartmouth.edu
Danail G BonchevProfessor of Mathematics, Director of Research in Bioinformatics at CSBCVerified email at vcu.edu
chuck careyMontana State UniversityVerified email at montana.edu
Brian BothnerMontana State University, University of Tennessee, The Scripps Research InstituteVerified email at chemistry.montana.edu
Benno SchwikowskiHead, Computational Systems Biomedicine Lab, Pasteur Institute, ParisVerified email at pasteur.fr
Jacob J. ValenzuelaInstitute for Systems BiologyVerified email at systemsbiology.org
Matthew W. FieldsMontana State UniversityVerified email at biofilm.montana.edu
Ross P. CarlsonMontana State UniversityVerified email at erc.montana.edu
Robin GerlachProfessor of Chemical and Biological Engineering, Montana State UniversityVerified email at coe.montana.edu
Brent M. PeytonProfessor of Chemical and Biological Engineering, Montana State UniversityVerified email at coe.montana.edu
James FolsomArxada Consumer Microbial ControlVerified email at arxada.com
Garth D. Ehrlich, Ph.D., F.A.A.A.S., F.A....Drexel UniversityVerified email at drexel.edu
Albert E ParkerMontana State UniversityVerified email at math.montana.edu
Mark YoungMontana State UniversityVerified email at montana.edu
Christophe G. LambertProfessor of Medicine, University of New Mexico; Chairman, Golden HelixVerified email at unm.edu
Douglas J. PerkinsProfessor of Medicine, University of New MexicoVerified email at salud.unm.edu
J.M.P. AlvesDept. Parasitology, ICB, University of Sao PauloVerified email at usp.br

Aurélien Mazurie

Montana State University

Verified email at montana.edu

systems biology bioinformatics


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Gene networks inference using dynamic Bayesian networks BE Perrin, L Ralaivola, A Mazurie, S Bottani, J Mallet, F d’Alche–Buc Bioinformatics 19 (suppl 2), ii138-ii148, 2003	623	2003
Potential role of multiple carbon fixation pathways during lipid accumulation in Phaeodactylum tricornutum J Valenzuela, A Mazurie, RP Carlson, R Gerlach, KE Cooksey, BM Peyton, ... Biotechnology for biofuels 5 (1), 40, 2012	245	2012
SREBP coordinates iron and ergosterol homeostasis to mediate triazole drug and hypoxia responses in the human fungal pathogen Aspergillus fumigatus M Blatzer, BM Barker, SD Willger, N Beckmann, SJ Blosser, EJ Cornish, ... PLoS Genet 7 (12), e1002374, 2011	193	2011
ChIP-seq and in vivo transcriptome analyses of the Aspergillus fumigatus SREBP SrbA reveals a new regulator of the fungal hypoxia response and virulence D Chung, BM Barker, CC Carey, B Merriman, ER Werner, BE Lechner, ... PLoS Pathog 10 (11), e1004487, 2014	180	2014
Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis JP Folsom, L Richards, B Pitts, F Roe, GD Ehrlich, A Parker, A Mazurie, ... BMC microbiology 10 (1), 294, 2010	162	2010
An evolutionary and functional assessment of regulatory network motifs A Mazurie, S Bottani, M Vergassola Genome biology 6 (4), R35, 2005	161	2005
Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter BM Barker, K Kroll, M Vödisch, A Mazurie, O Kniemeyer, RA Cramer BMC genomics 13 (1), 62, 2012	151	2012
Evolution of metabolic network organization A Mazurie, D Bonchev, B Schwikowski, GA Buck BMC Systems Biology 4 (1), 59, 2010	68	2010
Phylogenetic distances are encoded in networks of interacting pathways A Mazurie, D Bonchev, B Schwikowski, GA Buck Bioinformatics 24 (22), 2579-2585, 2008	65	2008
Application of support vector machines to metabolomics experiments with limited replicates J Heinemann, A Mazurie, M Tokmina-Lukaszewska, GJ Beilman, ... Metabolomics 10 (6), 1121-1128, 2014	57	2014
Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis B Bolduc, JF Wirth, A Mazurie, MJ Young The ISME journal 9 (10), 2162-2177, 2015	55	2015
Hypothyroidism risk compared among nine common bipolar disorder therapies in a large US cohort CG Lambert, AJ Mazurie, NR Lauve, NG Hurwitz, SS Young, ... Bipolar Disorders 18 (3), 247-260, 2016	49	2016
A novel sensitive microarray approach for differential screening using probes labelled with two different radioelements H Salin, T Vujasinovic, A Mazurie, S Maitrejean, C Menini, J Mallet, ... Nucleic acids research 30 (4), e17-e17, 2002	48	2002
Comparative genomics of Cryptosporidium AJ Mazurie, JM Alves, LS Ozaki, S Zhou, DC Schwartz, GA Buck International journal of genomics 2013, 2013	41	2013
Intensive herbicide use has selected for constitutively elevated levels of stress‐responsive mRNAs and proteins in multiple herbicide‐resistant Avena fatua L. BK Keith, EE Burns, B Bothner, CC Carey, AJ Mazurie, JK Hilmer, ... Pest Management Science, 2017	30	2017
Real-time digitization of metabolomics patterns from a living system using mass spectrometry J Heinemann, B Noon, MJ Mohigmi, A Mazurie, DL Dickensheets, ... Journal of The American Society for Mass Spectrometry 25 (10), 1755-1762, 2014	12	2014
A dynamic model of gene regulatory networks based on inertia principle F d’Alché-Buc, PJ Lahaye, BE Perrin, L Ralaivola, T Vujasinovic, ... Bioinformatics Using Computational Intelligence Paradigms, 93-117, 2005	10	2005
In situ gene expression profiling of the thermoacidophilic alga Cyanidioschyzon in relation to visible and ultraviolet irradiance DJ Skorupa, RW Castenholz, A Mazurie, C Carey, F Rosenzweig, ... Environmental microbiology 16 (6), 1627-1641, 2014	7	2014
Integrating genome‐scale data for gene essentiality prediction SB Roberts, AJ Mazurie, GA Buck Chemistry & biodiversity 4 (11), 2618-2630, 2007	7	2007
Inference of gene regulatory network with Dynamic Bayesian Network BE Perrin, L Ralaivola, A Mazurie, S Bottani, J Mallet, F d’Alché Buc Bioinformatics 19, i386-i49, 2003	5	2003

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