Ali Mortazavi
Ali Mortazavi
Professor of Developmental and Cell Biology, University of California, Irvine
Verified email at uci.edu
Title
Cited by
Cited by
Year
Mapping and quantifying mammalian transcriptomes by RNA-Seq
A Mortazavi, BA Williams, K McCue, L Schaeffer, B Wold
Nature methods 5 (7), 621, 2008
112182008
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ...
Nature biotechnology 28 (5), 511, 2010
100472010
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
87922012
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
35372012
Genome-wide mapping of in vivo protein-DNA interactions
DS Johnson, A Mortazavi, RM Myers, B Wold
Science 316 (5830), 1497-1502, 2007
27182007
A survey of best practices for RNA-seq data analysis
A Conesa, P Madrigal, S Tarazona, D Gomez-Cabrero, A Cervera, ...
Genome biology 17 (1), 13, 2016
12752016
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), 2011
11572011
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
11432014
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ...
Cell 148 (1-2), 84-98, 2012
10152012
Computation for ChIP-seq and RNA-seq studies
S Pepke, B Wold, A Mortazavi
Nature methods 6 (11s), S22, 2009
6712009
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, M Akerman, T Alioto, ...
Nature methods 10 (12), 1177-1184, 2013
4852013
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome Biology 13 (8), 418, 2012
2772012
Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity
JA Zhang, A Mortazavi, BA Williams, BJ Wold, EV Rothenberg
Cell 149 (2), 467-482, 2012
2682012
iPSC-Derived Human Microglia-like Cells to Study Neurological Diseases
EM Abud, RN Ramirez, ES Martinez, LM Healy, CHH Nguyen, ...
Neuron 94 (2), 278-293. e9, 2017
2462017
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
2282014
Regeneration of fat cells from myofibroblasts during wound healing
MV Plikus, CF Guerrero-Juarez, M Ito, YR Li, PH Dedhia, Y Zheng, ...
Science 355 (6326), 748-752, 2017
1862017
Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire
A Mortazavi, ECL Thompson, ST Garcia, RM Myers, B Wold
Genome research 16 (10), 1208-1221, 2006
1682006
RNA editing in the human ENCODE RNA-seq data
E Park, B Williams, BJ Wold, A Mortazavi
Genome Research 22 (9), 1626-1633, 2012
1522012
Effects of sequence variation on differential allelic transcription factor occupancy and gene expression
TE Reddy, J Gertz, F Pauli, KS Kucera, KE Varley, KM Newberry, ...
Genome research 22 (5), 860-869, 2012
1502012
Scaffolding a Caenorhabditis nematode genome with RNA-seq
A Mortazavi, EM Schwarz, B Williams, L Schaeffer, I Antoshechkin, ...
Genome research 20 (12), 1740-1747, 2010
1012010
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