Ali Mortazavi
Ali Mortazavi
Professor of Developmental and Cell Biology, University of California, Irvine
Verified email at uci.edu
TitleCited byYear
Mapping and quantifying mammalian transcriptomes by RNA-Seq
A Mortazavi, BA Williams, K McCue, L Schaeffer, B Wold
Nature methods 5 (7), 621, 2008
104302008
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
92602012
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ...
Nature biotechnology 28 (5), 511, 2010
89732010
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
31582012
Genome-wide mapping of in vivo protein-DNA interactions
DS Johnson, A Mortazavi, RM Myers, B Wold
Science 316 (5830), 1497-1502, 2007
25652007
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
11052011
A survey of best practices for RNA-seq data analysis
A Conesa, P Madrigal, S Tarazona, D Gomez-Cabrero, A Cervera, ...
Genome biology 17 (1), 13, 2016
10092016
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ...
Cell 148 (1-2), 84-98, 2012
9192012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
8252014
Computation for ChIP-seq and RNA-seq studies
S Pepke, B Wold, A Mortazavi
Nature methods 6 (11s), S22, 2009
6462009
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, M Akerman, T Alioto, ...
Nature methods 10 (12), 1177, 2013
4252013
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome Biology 13 (8), 418, 2012
2572012
Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity
JA Zhang, A Mortazavi, BA Williams, BJ Wold, EV Rothenberg
Cell 149 (2), 467-482, 2012
2552012
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
2122014
Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire
A Mortazavi, ECL Thompson, ST Garcia, RM Myers, B Wold
Genome research 16 (10), 1208-1221, 2006
1652006
iPSC-Derived Human Microglia-like Cells to Study Neurological Diseases
EM Abud, RN Ramirez, ES Martinez, LM Healy, CHH Nguyen, ...
Neuron 94 (2), 278-293. e9, 2017
1642017
RNA editing in the human ENCODE RNA-seq data
E Park, B Williams, BJ Wold, A Mortazavi
Genome Research 22 (9), 1626-1633, 2012
1442012
Regeneration of fat cells from myofibroblasts during wound healing
MV Plikus, CF Guerrero-Juarez, M Ito, YR Li, PH Dedhia, Y Zheng, ...
Science 355 (6326), 748-752, 2017
1402017
Effects of sequence variation on differential allelic transcription factor occupancy and gene expression
TE Reddy, J Gertz, F Pauli, KS Kucera, KE Varley, KM Newberry, ...
Genome research 22 (5), 860-869, 2012
1402012
Scaffolding a Caenorhabditis nematode genome with RNA-seq
A Mortazavi, EM Schwarz, B Williams, L Schaeffer, I Antoshechkin, ...
Genome research 20 (12), 1740-1747, 2010
972010
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Articles 1–20