Simone Ciccolella
Simone Ciccolella
University of Study Milano-Bicocca
Verified email at campus.unimib.it
Title
Cited by
Cited by
Year
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data
S Malikic, FR Mehrabadi, S Ciccolella, MK Rahman, C Ricketts, ...
Genome research 29 (11), 1860-1877, 2019
432019
Beyond perfect phylogeny: Multisample phylogeny reconstruction via ilp
P Bonizzoni, S Ciccolella, G Della Vedova, M Soto
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
202017
Does relaxing the infinite sites assumption give better tumor phylogenies? An ILP-based comparative approach
P Bonizzoni, S Ciccolella, G Della Vedova, M Soto
IEEE/ACM transactions on computational biology and bioinformatics 16 (5 …, 2018
122018
Inferring Cancer Progression from Single Cell Sequencing while allowing loss of mutations
S Ciccolella, MS Gomez, M Patterson, G Della Vedova, I Hajirasouliha, ...
bioRxiv, 268243, 2018
112018
gpps: An ILP-based approach for inferring cancer progression with mutation losses from single cell data
S Ciccolella, MS Gomez, MD Patterson, G Della Vedova, I Hajirasouliha, ...
BMC bioinformatics 21 (1), 1-16, 2020
62020
Inferring Cancer Progression from Single-cell Sequencing while Allowing Mutation Losses. bioRxiv
S Ciccolella, MS Gomez, M Patterson, G Della Vedova, I Hajirasouliha, ...
52018
Effective clustering for single cell sequencing cancer data
S Ciccolella, MD Patterson, P Bonizzoni, G Della Vedova
Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019
42019
Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels
S Ciccolella, G Bernardini, L Denti, P Bonizzoni, M Previtali, GD Vedova
Bioinformatics, 2020
22020
MALVIRUS: an integrated web application for viral variant calling
S Ciccolella, L Denti, P Bonizzoni, G Della Vedova, Y Pirola, M Previtali
bioRxiv, 2020
2020
Supplementary material for: Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels
S Ciccolella, G Bernardini, L Denti, P Bonizzoni, M Previtali, ...
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