| Testing congruence in phylogenomic analysis JW Leigh, E Susko, M Baumgartner, AJ Roger Systematic Biology 57 (1), 104-115, 2008 | 202 | 2008 |
| Do orthologous gene phylogenies really support tree-thinking? E Bapteste, E Susko, J Leigh, D MacLeod, RL Charlebois, WF Doolittle BMC Evolutionary Biology 5 (1), 1-10, 2005 | 195 | 2005 |
| Modeling site heterogeneity with posterior mean site frequency profiles accelerates accurate phylogenomic estimation HC Wang, BQ Minh, E Susko, AJ Roger Systematic biology 67 (2), 216-235, 2018 | 140 | 2018 |
| On reduced amino acid alphabets for phylogenetic inference E Susko, AJ Roger Molecular biology and evolution 24 (9), 2139-2150, 2007 | 122 | 2007 |
| Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1α phylogenies Y Inagaki, E Susko, NM Fast, AJ Roger Molecular biology and evolution 21 (7), 1340-1349, 2004 | 111 | 2004 |
| Likelihood, parsimony, and heterogeneous evolution M Spencer, E Susko, AJ Roger Molecular biology and evolution 22 (5), 1161-1164, 2005 | 105 | 2005 |
| A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny HC Wang, K Li, E Susko, AJ Roger BMC evolutionary biology 8 (1), 1-13, 2008 | 84 | 2008 |
| A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes J Filée, E Bapteste, E Susko, HM Krisch Molecular biology and evolution 23 (9), 1688-1696, 2006 | 83 | 2006 |
| On the correlation between genomic G+ C content and optimal growth temperature in prokaryotes: data quality and confounding factors HC Wang, E Susko, AJ Roger Biochemical and biophysical research communications 342 (3), 681-684, 2006 | 83 | 2006 |
| Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny E Bapteste, E Susko, J Leigh, I Ruiz-Trillo, J Bucknam, WF Doolittle Molecular Biology and Evolution 25 (1), 83-91, 2008 | 80 | 2008 |
| Testing for covarion-like evolution in protein sequences HC Wang, M Spencer, E Susko, AJ Roger Molecular biology and evolution 24 (1), 294-305, 2007 | 78 | 2007 |
| A SUF Fe-S cluster biogenesis system in the mitochondrion-related organelles of the anaerobic protist Pygsuia CW Stairs, L Eme, MW Brown, C Mutsaers, E Susko, G Dellaire, ... Current Biology 24 (11), 1176-1186, 2014 | 74 | 2014 |
| Visualizing and assessing phylogenetic congruence of core gene sets: a case study of the γ-Proteobacteria E Susko, J Leigh, WF Doolittle, E Bapteste Molecular biology and evolution 23 (5), 1019-1030, 2006 | 69 | 2006 |
| Testing for differences in rates-across-sites distributions in phylogenetic subtrees E Susko, Y Inagaki, C Field, ME Holder, AJ Roger Molecular biology and evolution 19 (9), 1514-1523, 2002 | 58 | 2002 |
| On strict stationarity and ergodicity of a non-linear ARMA model J Liu, E Susko Journal of Applied Probability, 363-373, 1992 | 58 | 1992 |
| Estimation of rates-across-sites distributions in phylogenetic substitution models E Susko, C Field, C Blouin, AJ Roger Systematic biology 52 (5), 594-603, 2003 | 54 | 2003 |
| Estimating mortality of Atlantic bluefin tuna (Thunnus thynnus) in an experimental recreational catch-and-release fishery MJW Stokesbury, JD Neilson, E Susko, SJ Cooke Biological Conservation 144 (11), 2684-2691, 2011 | 50 | 2011 |
| Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys E Susko, AJ Roger Bioinformatics 20 (14), 2279-2287, 2004 | 50 | 2004 |
| On inconsistency of the neighbor-joining, least squares, and minimum evolution estimation when substitution processes are incorrectly modeled E Susko, Y Inagaki, AJ Roger Molecular biology and evolution 21 (9), 1629-1642, 2004 | 50 | 2004 |
| On the distributions of bootstrap support and posterior distributions for a star tree E Susko Systematic Biology 57 (4), 602-612, 2008 | 46 | 2008 |
