Edward Susko
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Modeling site heterogeneity with posterior mean site frequency profiles accelerates accurate phylogenomic estimation
HC Wang, BQ Minh, E Susko, AJ Roger
Systematic biology 67 (2), 216-235, 2018
Testing congruence in phylogenomic analysis
JW Leigh, E Susko, M Baumgartner, AJ Roger
Systematic Biology 57 (1), 104-115, 2008
Do orthologous gene phylogenies really support tree-thinking?
E Bapteste, E Susko, J Leigh, D MacLeod, RL Charlebois, WF Doolittle
BMC Evolutionary Biology 5, 1-10, 2005
On reduced amino acid alphabets for phylogenetic inference
E Susko, AJ Roger
Molecular biology and evolution 24 (9), 2139-2150, 2007
Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1α phylogenies
Y Inagaki, E Susko, NM Fast, AJ Roger
Molecular biology and evolution 21 (7), 1340-1349, 2004
A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny
HC Wang, K Li, E Susko, AJ Roger
BMC evolutionary biology 8, 1-13, 2008
Likelihood, parsimony, and heterogeneous evolution
M Spencer, E Susko, AJ Roger
Molecular biology and evolution 22 (5), 1161-1164, 2005
On the correlation between genomic G+ C content and optimal growth temperature in prokaryotes: data quality and confounding factors
HC Wang, E Susko, AJ Roger
Biochemical and biophysical research communications 342 (3), 681-684, 2006
A SUF Fe-S cluster biogenesis system in the mitochondrion-related organelles of the anaerobic protist Pygsuia
CW Stairs, L Eme, MW Brown, C Mutsaers, E Susko, G Dellaire, ...
Current Biology 24 (11), 1176-1186, 2014
An updated phylogeny of the Alphaproteobacteria reveals that the parasitic Rickettsiales and Holosporales have independent origins
SA Muñoz-Gómez, S Hess, G Burger, BF Lang, E Susko, CH Slamovits, ...
elife 8, e42535, 2019
A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes
J Filée, E Bapteste, E Susko, HM Krisch
Molecular biology and evolution 23 (9), 1688-1696, 2006
Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny
E Bapteste, E Susko, J Leigh, I Ruiz-Trillo, J Bucknam, WF Doolittle
Molecular Biology and Evolution 25 (1), 83-91, 2008
Testing for covarion-like evolution in protein sequences
HC Wang, M Spencer, E Susko, AJ Roger
Molecular biology and evolution 24 (1), 294-305, 2007
Visualizing and assessing phylogenetic congruence of core gene sets: a case study of the γ-Proteobacteria
E Susko, J Leigh, WF Doolittle, E Bapteste
Molecular biology and evolution 23 (5), 1019-1030, 2006
Estimating mortality of Atlantic bluefin tuna (Thunnus thynnus) in an experimental recreational catch-and-release fishery
MJW Stokesbury, JD Neilson, E Susko, SJ Cooke
Biological Conservation 144 (11), 2684-2691, 2011
Estimation of rates-across-sites distributions in phylogenetic substitution models
E Susko, C Field, C Blouin, AJ Roger
Systematic biology 52 (5), 594-603, 2003
On strict stationarity and ergodicity of a non-linear ARMA model
J Liu, E Susko
Journal of Applied Probability 29 (2), 363-373, 1992
Testing for differences in rates-across-sites distributions in phylogenetic subtrees
E Susko, Y Inagaki, C Field, ME Holder, AJ Roger
Molecular biology and evolution 19 (9), 1514-1523, 2002
Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys
E Susko, AJ Roger
Bioinformatics 20 (14), 2279-2287, 2004
Bootstrap support is not first-order correct
E Susko
Systematic biology 58 (2), 211-223, 2009
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