Sharadha Sakthikumar
Sharadha Sakthikumar
Uppsala University, Broad Institute of MIT and Harvard
Verified email at broadinstitute.org
Title
Cited by
Cited by
Year
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement
BJ Walker, T Abeel, T Shea, M Priest, A Abouelliel, S Sakthikumar, ...
PloS one 9 (11), e112963, 2014
26022014
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
LJ Ma, HC Van Der Does, KA Borkovich, JJ Coleman, MJ Daboussi, ...
Nature 464 (7287), 367-373, 2010
12462010
Evolution of pathogenicity and sexual reproduction in eight Candida genomes
G Butler, MD Rasmussen, MF Lin, MAS Santos, S Sakthikumar, CA Munro, ...
Nature 459 (7247), 657-662, 2009
9372009
Obligate biotrophy features unraveled by the genomic analysis of rust fungi
S Duplessis, CA Cuomo, YC Lin, A Aerts, E Tisserant, C Veneault-Fourrey, ...
Proceedings of the National Academy of Sciences 108 (22), 9166-9171, 2011
5662011
Genetic and phenotypic intra-species variation in Candida albicans
MP Hirakawa, DA Martinez, S Sakthikumar, MZ Anderson, A Berlin, ...
Genome research 25 (3), 413-425, 2015
1792015
Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis
CA Desjardins, MD Champion, JW Holder, A Muszewska, J Goldberg, ...
PLoS Genet 7 (10), e1002345, 2011
1602011
Genome evolution and innovation across the four major lineages of Cryptococcus gattii
RA Farrer, CA Desjardins, S Sakthikumar, S Gujja, S Saif, Q Zeng, Y Chen, ...
MBio 6 (5), 2015
722015
Genome diversity, recombination, and virulence across the major lineages of Paracoccidioides
JF Mu˝oz, RA Farrer, CA Desjardins, JE Gallo, S Sykes, S Sakthikumar, ...
MSphere 1 (5), 2016
712016
Comparative analysis highlights variable genome content of wheat rusts and divergence of the mating loci
CA Cuomo, G Bakkeren, HB Khalil, V Panwar, D Joly, R Linning, ...
G3: Genes, Genomes, Genetics 7 (2), 361-376, 2017
692017
Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level
J Rhodes, CA Desjardins, SM Sykes, MA Beale, M Vanhove, ...
Genetics 207 (1), 327-346, 2017
492017
SETD2 is recurrently mutated in whole-exome sequenced canine osteosarcoma
S Sakthikumar, I Elvers, J Kim, ML Arendt, R Thomas, J Turner-Maier, ...
Cancer research 78 (13), 3421-3431, 2018
392018
Microevolution of serial clinical isolates of Cryptococcus neoformans var. grubii and C. gattii
Y Chen, RA Farrer, C Giamberardino, S Sakthikumar, A Jones, T Yang, ...
MBio 8 (2), 2017
392017
Identification of the mating-type (MAT) locus that controls sexual reproduction of Blastomyces dermatitidis
W Li, TD Sullivan, E Walton, AF Averette, S Sakthikumar, CA Cuomo, ...
Eukaryotic cell 12 (1), 109-117, 2013
342013
Comparative genomics integrated with association analysis identifies candidate effector genes corresponding to Lr20 in phenotype-paired Puccinia triticina isolates from Australia
JQ Wu, S Sakthikumar, C Dong, P Zhang, CA Cuomo, RF Park
Frontiers in plant science 8, 148, 2017
272017
Comparative genomics reveals shared mutational landscape in canine hemangiosarcoma and human angiosarcoma
K Megquier, J Turner-Maier, R Swofford, JH Kim, AL Sarver, C Wang, ...
Molecular Cancer Research 17 (12), 2410-2421, 2019
212019
Microevolution of serial clinical isolates of Cryptococcus neoformans var. grubii and C. gattii. mBio 8: e00166-17
Y Chen, RA Farrer, C Giamberardino, S Sakthikumar, A Jones, T Yang, ...
52017
Whole-genome sequencing of multiple isolates of Puccinia triticina reveals asexual lineages evolving by recurrent mutations.
JP Fellers, S Sakthikumar, F He, K McRell, G Bakkeren, CA Cuomo, ...
BioRxiv, 2020
12020
Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes
S Sakthikumar, A Roy, L Haseeb, ME Pettersson, E Sundstr÷m, ...
Genome Biology 21, 1-22, 2020
2020
Characterizing the spectrum of somatic alterations in canine and human cancers
S Sakthikumar
Acta Universitatis Upsaliensis, 2020
2020
Comparative genomics of C-gattii and the evolution of its pathogenicity
RA Farrer, S Sakthikumar, K Voelz, MC Fisher, R May, C Cuomo
MYCOSES 57, 32-32, 2014
2014
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