Kemal Eren
Kemal Eren
University of San Diego, CA
Verified email at eng.ucsd.edu - Homepage
Title
Cited by
Cited by
Year
Ilastik: interactive machine learning for (bio) image analysis
S Berg, D Kutra, T Kroeger, CN Straehle, BX Kausler, C Haubold, ...
Nature Methods 16 (12), 1226-1232, 2019
3382019
Antibody 10-1074 suppresses viremia in HIV-1-infected individuals
M Caskey, T Schoofs, H Gruell, A Settler, T Karagounis, EF Kreider, ...
Nature medicine 23 (2), 185-191, 2017
3162017
Gene-wide identification of episodic selection
B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ...
Molecular Biology and Evolution, 2015
2792015
A comparative analysis of biclustering algorithms for gene expression data
K Eren, M Deveci, O Küçüktunç, ÜV Çatalyürek
Briefings in bioinformatics 14 (3), 279-292, 2013
2552013
Early antibody lineage diversification and independent limb maturation lead to broad HIV-1 neutralization targeting the Env high-mannose patch
DT MacLeod, NM Choi, B Briney, F Garces, LS Ver, E Landais, B Murrell, ...
Immunity 44 (5), 1215-1226, 2016
111*2016
HIV envelope glycoform heterogeneity and localized diversity govern the initiation and maturation of a V2 apex broadly neutralizing antibody lineage
E Landais, B Murrell, B Briney, S Murrell, K Rantalainen, ZT Berndsen, ...
Immunity 47 (5), 990-1003. e9, 2017
732017
Rapid sequencing of complete env genes from primary HIV-1 samples
M Laird Smith, B Murrell, K Eren, C Ignacio, E Landais, S Weaver, ...
Virus Evolution 2 (2), 2016
262016
Long-read amplicon denoising
V Kumar, T Vollbrecht, M Chernyshev, S Mohan, B Hanst, N Bavafa, ...
Nucleic acids research 47 (18), e104-e104, 2019
212019
HIV superinfection drives de novo antibody responses and not neutralization breadth
DJ Sheward, J Marais, V Bekker, B Murrell, K Eren, JN Bhiman, ...
Cell host & microbe 24 (4), 593-599. e3, 2018
192018
Kosakovsky Pond SL
DT MacLeod, NM Choi, B Briney, F Garces, LS Ver, E Landais, B Murrell, ...
Wilson IA, Burton DR, Poignard P, Price MA, Gilmour J, Fast P, Kamali A …, 2016
92016
Application of biclustering algorithms to biological data
K Eren
The Ohio State University, 2012
62012
Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons
K Eren, S Weaver, R Ketteringham, M Valentyn, M Laird Smith, V Kumar, ...
PLoS computational biology 14 (12), e1006498, 2018
42018
RIFRAF: a frame-resolving consensus algorithm
K Eren, B Murrell
Bioinformatics 34 (22), 3817-3824, 2018
22018
Querying co-regulated genes on diverse gene expression datasets via biclustering
M Deveci, O Küçüktunç, K Eren, D Bozdağ, K Kaya, ÜV Çatalyürek
Microarray Data Analysis, 55-74, 2015
12015
Association of Counseling and Psychotherapy on Retention in Medication for Addiction Treatment Within a Large Medicaid Population.
K Eren, J Schuster, A Herschell, D Loveland, G Neimark, M Mihalyo, ...
Journal of Addiction Medicine, 2021
2021
Inter-class Concomitant Pharmacotherapy in Medicaid-Insured Youth Receiving Psychiatric Residential Treatment
GA Edelsohn, K Eren, M Parthasarathy, ND Ryan, A Herschell
Frontiers in Psychiatry 12, 737, 2021
2021
RIFRAF: a frame-resolving consensus algorithm Supporting information
K Eren, B Murrell
2017
Understanding the evolution of HIV-1 Env through computational analysis and visualization of long-read amplicon sequences
K Eren
University of California, San Diego, 2017
2017
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Articles 1–18