Nabil-Fareed Alikhan
Nabil-Fareed Alikhan
Quadram Institute Biosciences
Verified email at quadram.ac.uk - Homepage
Title
Cited by
Cited by
Year
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
NF Alikhan, NK Petty, NLB Zakour, SA Beatson
BMC genomics 12 (1), 1-10, 2011
17712011
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ...
Cell 184 (1), 64-75. e11, 2021
3932021
A genomic overview of the population structure of Salmonella
NF Alikhan, Z Zhou, MJ Sergeant, M Achtman
PLoS genetics 14 (4), e1007261, 2018
3092018
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Z Zhou, NF Alikhan, MJ Sergeant, N Luhmann, C Vaz, AP Francisco, ...
Genome research 28 (9), 1395-1404, 2018
2542018
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
Z Zhou, NF Alikhan, K Mohamed, Y Fan, M Achtman, D Brown, ...
Genome research 30 (1), 138-152, 2020
185*2020
Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak
ME Pearce, NF Alikhan, TJ Dallman, Z Zhou, K Grant, MCJ Maiden
International journal of food microbiology 274, 1-11, 2018
832018
Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study
MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ...
The Lancet Public Health 6 (5), e335-e345, 2021
712021
Pan-genome analysis of ancient and modern Salmonella enterica demonstrates genomic stability of the invasive para C lineage for millennia
Z Zhou, I Lundstrøm, A Tran-Dien, S Duchêne, NF Alikhan, MJ Sergeant, ...
Current Biology 28 (15), 2420-2428. e10, 2018
66*2018
Genome Sequence of the Emerging Pathogen Aeromonas caviae
SA Beatson, M das Graças de Luna, NL Bachmann, NF Alikhan, ...
Journal of Bacteriology 193 (5), 1286-1287, 2011
372011
Mechanisms Involved in Acquisition of blaNDM Genes by IncA/C2 and IncFIIY Plasmids
AM Wailan, HE Sidjabat, WK Yam, NF Alikhan, NK Petty, AL Sartor, ...
Antimicrobial agents and chemotherapy 60 (7), 4082-4088, 2016
352016
Comparison of classical multi-locus sequence typing software for next-generation sequencing data
AJ Page, NF Alikhan, HA Carleton, T Seemann, JA Keane, LS Katz
Microbial genomics 3 (8), 2017
322017
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process
FM Key, C Posth, LR Esquivel-Gomez, R Hübler, MA Spyrou, ...
Nature ecology & evolution 4 (3), 324-333, 2020
302020
CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes
DJ Baker, A Aydin, T Le-Viet, GL Kay, S Rudder, L de Oliveira Martins, ...
Genome medicine 13 (1), 1-11, 2021
24*2021
Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition
SA Beatson, NL Ben Zakour, M Totsika, BM Forde, RE Watts, AN Mabbett, ...
Infection and immunity 83 (5), 1749-1764, 2015
202015
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7
B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ...
Cell reports 35 (13), 109292, 2021
192021
Genome-wide identification and characterization of a superfamily of bacterial extracellular contractile injection systems
L Chen, N Song, B Liu, N Zhang, NF Alikhan, Z Zhou, Y Zhou, S Zhou, ...
Cell reports 29 (2), 511-521. e2, 2019
182019
ICTV virus taxonomy profile: Herelleviridae
J Barylski, AM Kropinski, NF Alikhan, EM Adriaenssens, IR Consortium
The Journal of general virology 101 (4), 362, 2020
142020
Accurate reconstruction of microbial strains from metagenomic sequencing using representative reference genomes
Z Zhou, N Luhmann, NF Alikhan, C Quince, M Achtman
International Conference on Research in Computational Molecular Biology, 225-240, 2018
142018
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study
KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ...
The Lancet Infectious Diseases, 2021
132021
Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation
M Bawn, NF Alikhan, G Thilliez, M Kirkwood, NE Wheeler, L Petrovska, ...
PLoS genetics 16 (6), e1008850, 2020
132020
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