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Fábio Madeira
Fábio Madeira
Technical Project Lead, PhD, EMBL-EBI
Verified email at ebi.ac.uk - Homepage
Title
Cited by
Cited by
Year
UniProt: a worldwide hub of protein knowledge
UniProt Consortium
Nucleic acids research 47 (D1), D506-D515, 2019
63032019
UniProt: the universal protein knowledgebase in 2021
Nucleic acids research 49 (D1), D480-D489, 2021
52622021
The EMBL-EBI search and sequence analysis tools APIs in 2019
F Madeira, YM Park, J Lee, N Buso, T Gur, N Madhusoodanan, ...
Nucleic acids research 47 (W1), W636-W641, 2019
43372019
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
AL Mitchell, TK Attwood, PC Babbitt, M Blum, P Bork, A Bridge, SD Brown, ...
Nucleic acids research 47 (D1), D351-D360, 2019
14632019
UniProt: the universal protein knowledgebase in 2023
Nucleic Acids Research 51 (D1), D523-D531, 2023
14592023
Search and sequence analysis tools services from EMBL-EBI in 2022
F Madeira, M Pearce, ARN Tivey, P Basutkar, J Lee, O Edbali, ...
Nucleic acids research 50 (W1), W276-W279, 2022
12642022
14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides
F Madeira, M Tinti, G Murugesan, E Berrett, M Stafford, R Toth, C Cole, ...
Bioinformatics 31 (14), 2276-2283, 2015
2002015
A crowdsourcing open platform for literature curation in UniProt
Y Wang, Q Wang, H Huang, W Huang, Y Chen, PB McGarvey, CH Wu, ...
PLoS biology 19 (12), e3001464, 2021
1052021
Annotation of biologically relevant ligands in UniProtKB using ChEBI
E Coudert, S Gehant, E de Castro, M Pozzato, D Baratin, T Neto, ...
Bioinformatics 39 (1), btac793, 2023
932023
UniProt: the universal protein knowledgebase in 2023
A Bateman, MJ Martin, S Orchard, M Magrane, S Ahmad, E Alpi, ...
Nucleic Acids Research 51 (D 1), D523-D531, 2023
822023
PDBe-KB: a community-driven resource for structural and functional annotations
M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ...
Nucleic Acids Research 48 (D1), D344-D353, 2020
752020
The European nucleotide archive in 2021
C Cummins, A Ahamed, R Aslam, J Burgin, R Devraj, O Edbali, D Gupta, ...
Nucleic acids research 50 (D1), D106-D110, 2022
662022
ANIA: ANnotation and Integrated Analysis of the 14-3-3 interactome
M Tinti, F Madeira, G Murugesan, G Hoxhaj, R Toth, C MacKintosh
Database 2014, bat085, 2014
652014
R2DT is a framework for predicting and visualising RNA secondary structure using templates
BA Sweeney, D Hoksza, EP Nawrocki, CE Ribas, F Madeira, JJ Cannone, ...
Nature Communications 12 (1), 3494, 2021
602021
Recommendations for the packaging and containerizing of bioinformatics software
B Gruening, O Sallou, P Moreno, F da Veiga Leprevost, H Ménager, ...
F1000Research 7, 2018
422018
Using EMBL‐EBI Services via Web Interface and Programmatically via Web Services
F Madeira, N Madhusoodanan, J Lee, ARN Tivey, R Lopez
Current protocols in bioinformatics 66 (1), e74, 2019
352019
JABAWS 2.2 distributed web services for Bioinformatics: protein disorder, conservation and RNA secondary structure
PV Troshin, JB Procter, A Sherstnev, DL Barton, F Madeira, GJ Barton
Bioinformatics 34 (11), 1939-1940, 2018
282018
Uniprot tools: bLAST, align, peptide search, and ID mapping
R Zaru, S Orchard, UniProt Consortium
Current Protocols 3 (3), e697, 2023
192023
The Dundee resource for sequence analysis and structure prediction
SA MacGowan, F Madeira, T Britto‐Borges, M Warowny, A Drozdetskiy, ...
Protein Science 29 (1), 277-297, 2020
162020
Human missense variation is constrained by domain structure and highlights functional and pathogenic residues
SA MacGowan, F Madeira, T Britto-Borges, MS Schmittner, C Cole, ...
BioRxiv, 127050, 2017
112017
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