| Rapid spread of the SARS-CoV-2 Delta variant in some French regions, June 2021 S Alizon, S Haim-Boukobza, V Foulongne, L Verdurme, ... Eurosurveillance 26 (28), 2100573, 2021 | 123 | 2021 |
| Optimal COVID-19 epidemic control until vaccine deployment R Djidjou-Demasse, Y Michalakis, M Choisy, MT Sofonea, S Alizon MedRxiv, 2020.04. 02.20049189, 2020 | 122* | 2020 |
| Age-structured non-pharmaceutical interventions for optimal control of COVID-19 epidemic Q Richard, S Alizon, M Choisy, MT Sofonea, R Djidjou-Demasse PLoS computational biology 17 (3), e1008776, 2021 | 55 | 2021 |
| Memory is key in capturing COVID-19 epidemiological dynamics MT Sofonea, B Reyné, B Elie, R Djidjou-Demasse, C Selinger, ... Epidemics 35, 100459, 2021 | 53 | 2021 |
| Exposing the diversity of multiple infection patterns MT Sofonea, S Alizon, Y Michalakis Journal of Theoretical Biology 419, 278-289, 2017 | 50 | 2017 |
| From within-host interactions to epidemiological competition: a general model for multiple infections MT Sofonea, S Alizon, Y Michalakis Philosophical Transactions of the Royal Society B: Biological Sciences 370 …, 2015 | 47 | 2015 |
| SARS‐CoV‐2 virulence evolution: avirulence theory, immunity and trade‐offs S Alizon, MT Sofonea Journal of Evolutionary Biology 34 (12), 1867-1877, 2021 | 44 | 2021 |
| Detecting rapid spread of SARS-cov-2 variants, france, january 26–february 16, 2021 S Haim-Boukobza, B Roquebert, S Trombert-Paolantoni, E Lecorche, ... Emerging infectious diseases 27 (5), 1496, 2021 | 42 | 2021 |
| Epidemiological monitoring and control perspectives: application of a parsimonious modelling framework to the COVID-19 dynamics in France MT Sofonea, B Reyné, B Elie, R Djidjou-Demasse, C Selinger, ... medRxiv, 2020.05. 22.20110593, 2020 | 36 | 2020 |
| The SARS-CoV-2 B. 1.351 lineage (VOC β) is outgrowing the B. 1.1. 7 lineage (VOC α) in some French regions in April 2021 B Roquebert, S Trombert-Paolantoni, S Haim-Boukobza, E Lecorche, ... Eurosurveillance 26 (23), 2100447, 2021 | 30 | 2021 |
| Small bottleneck size in a highly multipartite virus during a complete infection cycle R Gallet, F Fabre, G Thébaud, MT Sofonea, A Sicard, S Blanc, ... Journal of Virology 92 (14), 10.1128/jvi. 00139-18, 2018 | 29 | 2018 |
| SARS-CoV-2 viral RNA levels are not'viral load' Y Michalakis, MT Sofonea, S Alizon, IG Bravo Trends in microbiology 29 (11), 970-972, 2021 | 27 | 2021 |
| From Delta to Omicron: analysing the SARS-CoV-2 epidemic in France using variant-specific screening tests (September 1 to December 18, 2021) MT Sofonea, B Roquebert, V Foulongne, L Verdurme, ... MedRxiv, 2021.12. 31.21268583, 2022 | 24* | 2022 |
| SARS-CoV-2 variants of concern are associated with lower RT-PCR amplification cycles between January and March 2021 in France B Roquebert, S Haim-Boukobza, S Trombert-Paolantoni, E Lecorche, ... International Journal of Infectious Diseases 113, 12-14, 2021 | 22 | 2021 |
| Variant‐specific SARS‐CoV‐2 within‐host kinetics B Elie, B Roquebert, MT Sofonea, S Trombert‐Paolantoni, V Foulongne, ... Journal of medical virology, 2022 | 19* | 2022 |
| European first-year university students accept evolution but lack substantial knowledge about it: a standardized European cross-country assessment P Kuschmierz, A Beniermann, A Bergmann, R Pinxten, T Aivelo, ... Evolution: Education and Outreach 14, 1-22, 2021 | 19* | 2021 |
| Analyzing and Modeling the Spread of SARS-CoV-2 Omicron Lineages BA. 1 and BA. 2, France, September 2021–February 2022 MT Sofonea, B Roquebert, V Foulongne, D Morquin, L Verdurme, ... Emerging Infectious Diseases 28 (7), 1355, 2022 | 18 | 2022 |
| Epidemiological and clinical insights from SARS-CoV-2 RT-PCR crossing threshold values, France, January to November 2020 S Alizon, C Selinger, MT Sofonea, S Haim-Boukobza, JM Giannoli, ... Eurosurveillance 27 (6), 2100406, 2022 | 18* | 2022 |
| Early phylodynamics analysis of the COVID-19 epidemic in France G Danesh, B Elie, Y Michalakis, MT Sofonea, A Bal, S Behillil, G Destras, ... Peer Community Journal 1, 2021 | 17 | 2021 |
| Épidémiologie mathématique et modélisation de la pandémie de Covid-19: enjeux et diversité R Djidjou-Demasse, C Selinger, MT Sofonea Revue francophone des laboratoires 2020 (526), 63-69, 2020 | 16 | 2020 |
Samuel AlizonDirecteur de Recherche, CNRS, CIRB, ParisVerified email at ird.fr
