James J Cai
James J Cai
Associate Professor, Texas A&M University
Verified email at tamu.edu - Homepage
Title
Cited by
Cited by
Year
Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia
PCY Woo, SKP Lau, C Chu, K Chan, H Tsoi, Y Huang, BHL Wong, ...
Journal of virology 79 (2), 884-895, 2005
13832005
Pervasive hitchhiking at coding and regulatory sites in humans
JJ Cai, JM Macpherson, G Sella, DA Petrov
PLoS genetics 5 (1), e1000336, 2009
1302009
Widespread establishment and regulatory impact of Alu exons in human genes
S Shen, L Lin, JJ Cai, P Jiang, EJ Kenkel, MR Stroik, S Sato, BL Davidson, ...
Proceedings of the National Academy of Sciences 108 (7), 2837-2842, 2011
1222011
Diverse splicing patterns of exonized Alu elements in human tissues
L Lin, S Shen, A Tye, JJ Cai, P Jiang, BL Davidson, Y Xing
PloS Genetics 4 (10), e1000225, 2008
1132008
Genetic variants contribute to gene expression variability in humans
AM Hulse, JJ Cai
Genetics 193 (1), 95-108, 2013
1052013
High diversity of polyketide synthase genes and the melanin biosynthesis gene cluster in Penicillium marneffei
PCY Woo, EWT Tam, KTK Chong, JJ Cai, ETK Tung, AHY Ngan, SKP Lau, ...
FEBS Journal 277 (18), 3750-3758, 2010
992010
Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes
JJ Cai, DA Petrov
Genome biology and evolution 2, 393-409, 2010
932010
Accelerated evolutionary rate may be responsible for the emergence of lineage-specific genes in ascomycota
JJ Cai, PCY Woo, SKP Lau, DK Smith, K Yuen
Journal of molecular evolution 63 (1), 1-11, 2006
662006
Genomic and experimental evidence for a potential sexual cycle in the pathogenic thermal dimorphic fungus< i> Penicillium marneffei</i>
PCY Woo, KTK Chong, H Tse, JJ Cai, CCY Lau, AC Zhou, SKP Lau, ...
FEBS letters 580 (14), 3409-3416, 2006
662006
The mitochondrial genome of the thermal dimorphic fungus< i> Penicillium marneffei</i> is more closely related to those of molds than yeasts
PCY Woo, H Zhen, JJ Cai, J Yu, SKP Lau, J Wang, JLL Teng, SSY Wong, ...
FEBS letters 555 (3), 469-477, 2003
662003
Broker genes in human disease
JJ Cai, E Borenstein, DA Petrov
Genome Biology and Evolution 2, 815, 2010
652010
MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution
JJ Cai, DK Smith, X Xia, K Yuen
BMC bioinformatics 6 (1), 64, 2005
622005
Similarly strong purifying selection acts on human disease genes of all evolutionary ages
JJ Cai, E Borenstein, R Chen, DA Petrov
Genome biology and evolution 1, 131, 2009
602009
Aberrant gene expression in humans.
Y Zeng, GW Wang, E Yang, G Ji, BL Candice L., JJ Cai
PLoS genetics 11 (1), e1004942, 2015
542015
Exploring the Penicillium marneffei genome
K Yuen, G Pascal, SSY Wong, P Glaser, PCY Woo, F Kunst, JJ Cai, ...
Archives of microbiology 179 (5), 339-353, 2003
542003
The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats
PCY Woo, SKP Lau, H Tse, JLL Teng, SOT Curreem, AKL Tsang, ...
PLoS genetics 5 (3), e1000416, 2009
532009
Gene expression responses of threespine stickleback to salinity: implications for salt-sensitive hypertension
G Wang, E Yang, KJ Smith, Y Zeng, G Ji, R Connon, NA Fangue, JJ Cai
Frontiers in genetics 5, 312, 2014
442014
Draft genome sequence of Penicillium marneffei strain PM1
PCY Woo, SKP Lau, B Liu, JJ Cai, KTK Chong, H Tse, RYT Kao, ...
Eukaryotic Cell 10 (12), 1740-1741, 2011
402011
Natural selection retains overrepresented out-of-frame stop codons against frameshift peptides in prokaryotes
H Tse, JJ Cai, HW Tsoi, EPT Lam, KY Yuen
BMC genomics 11 (1), 1-13, 2010
392010
Additive, epistatic, and environmental effects through the lens of expression variability QTL in a twin cohort
G Wang, E Yang, CL Brinkmeyer-Langford, JJ Cai
Genetics 196 (2), 413-425, 2014
382014
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Articles 1–20