| A high-throughput platform for stem cell niche co-cultures and downstream gene expression analysis AD Gracz, IA Williamson, KC Roche, MJ Johnston, F Wang, Y Wang, ... Nature cell biology 17 (3), 340-349, 2015 | 154 | 2015 |
| Distinct levels of Sox9 expression mark colon epithelial stem cells that form colonoids in culture S Ramalingam, GW Daughtridge, MJ Johnston, AD Gracz, ST Magness American Journal of Physiology-Gastrointestinal and Liver Physiology 302 (1 …, 2012 | 96 | 2012 |
| High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma MJ Johnston, A Nikolic, N Ninkovic, P Guilhamon, FMG Cavalli, ... Genome research 29 (8), 1211-1222, 2019 | 54 | 2019 |
| EGFR signaling promotes self-renewal through the establishment of cell polarity in Drosophila follicle stem cells A Castanieto, MJ Johnston, TG Nystul Elife 3, e04437, 2014 | 54 | 2014 |
| Intratumoral genetic and functional heterogeneity in pediatric glioblastoma M Hoffman, AH Gillmor, DJ Kunz, MJ Johnston, A Nikolic, K Narta, ... Cancer research 79 (9), 2111-2123, 2019 | 41 | 2019 |
| Phosphorylated Groucho delays differentiation in the follicle stem cell lineage by providing a molecular memory of EGFR signaling in the niche MJ Johnston, S Bar-Cohen, Z Paroush, TG Nystul Development 143 (24), 4631-4642, 2016 | 24 | 2016 |
| Copy-scAT: Deconvoluting single-cell chromatin accessibility of genetic subclones in cancer A Nikolic, D Singhal, K Ellestad, M Johnston, Y Shen, A Gillmor, ... Science advances 7 (42), eabg6045, 2021 | 21 | 2021 |
| Hi-C detects genomic structural variants in peripheral blood of pediatric leukemia patients C Mallard, MJ Johnston, A Bobyn, A Nikolic, B Argiropoulos, JA Chan, ... Molecular Case Studies 8 (1), a006157, 2022 | 8 | 2022 |
| EGFR signaling promotes the identity of Drosophila follicle stem cells via maintenance of partial cell polarity. AM Castanieto UCSF, 2015 | 5 | 2015 |
| macroH2A2 antagonizes epigenetic programs of stemness in glioblastoma A Nikolic, F Maule, A Bobyn, K Ellestad, S Paik, SA Marhon, P Mehdipour, ... Nature Communications 14 (1), 3062, 2023 | 3 | 2023 |
| Detection and genomic analysis of BRAF fusions in Juvenile Pilocytic Astrocytoma through the combination and integration of multi-omic data M Zwaig, A Baguette, B Hu, M Johnston, H Lakkis, EM Nakada, D Faury, ... BMC cancer 22 (1), 1297, 2022 | 3 | 2022 |
| An in vitro assay for clonogenic, high‐throughput analysis of intestinal stem cells AD Gracz, MJ Johnston, F Wang, IA Williamson, Y Wang, J Balowski, ... The FASEB Journal 26, 1160.1-1160.1, 2012 | 3 | 2012 |
| Transcriptome analysis of FOXO-dependent hypoxia gene expression identifies Hipk as a regulator of low oxygen tolerance in Drosophila K Ding, EC Barretto, M Johnston, B Lee, M Gallo, SS Grewal G3 12 (12), jkac263, 2022 | 2 | 2022 |
| CASCADES, a novel SOX2 super-enhancer associated long noncoding RNA, regulates cancer stem cell specification and differentiation in glioblastoma multiforme U Shahzad, C Li, M Johnston, JJ Wang, N Sabha, FS Varn, ... bioRxiv, 2020.09. 05.284349, 2020 | 2 | 2020 |
| Groucho and Six4 promote Notch-mediated differentiation of follicle stem cells in the absence of EGFR signaling MJ JOHNSTON, S COHEN, Z PAROUSH, TG NYSTUL Development 143, 4631, 2016 | 2 | 2016 |
| LOSS OF CAPICUA IMPAIRS OLIGODENDROGENESIS IN THE DEVELOPING MOUSE BRAIN J Pyczek, CF Hall, M Johnston, D Singhal, M Gallo, S Morrissy, J Chan NEURO-ONCOLOGY 25, 2023 | | 2023 |
| Linked-read based analysis of the medulloblastoma genome M Zwaig, MJ Johnston, JJY Lee, H Farooq, M Gallo, N Jabado, MD Taylor, ... Frontiers in Oncology 13, 1221611, 2023 | | 2023 |
| H3K27me3 spreading organizes canonical PRC1 chromatin architecture to regulate developmental programs B Krug, B Hu, H Chen, A Ptack, X Chen, KH Gretarsson, S Deshmukh, ... bioRxiv, 2023.11. 28.567931, 2023 | | 2023 |
| STEM-16. MACROH2A2 REPRESSES AN EPIGENETIC SELF-RENEWAL NETWORK IN GLIOBLASTOMA STEM CELLS A Nikolic, A Bobyn, F Maule, K Ellestad, S Paik, S Marhon, P Mehdipour, ... Neuro-Oncology 24 (Supplement_7), vii34-vii34, 2022 | | 2022 |
| EPCO-38. TYPE B ULTRA LONG-RANGE INTERACTIONS IN PFAS (TULIPS) ARE RECURRENT EPIGENOMIC FEATURES OF PFA EPENDYMOMA M Johnston, JJY Lee, B Hu, A Nikolic, A Baguette, S Paik, H Chen, ... Neuro-Oncology 24 (Supplement_7), vii124-vii124, 2022 | | 2022 |
