| PowerMarker: an integrated analysis environment for genetic marker analysis K Liu, SV Muse Bioinformatics 21 (9), 2128-2129, 2005 | 5469 | 2005 |
| HyPhy: hypothesis testing using phylogenies SLK Pond, SDW Frost, SV Muse Bioinformatics 21 (5), 676-679, 2005 | 3502 | 2005 |
| A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. SV Muse, BS Gaut Molecular biology and evolution 11 (5), 715-724, 1994 | 1077 | 1994 |
| Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond Molecular biology and evolution 35 (3), 773-777, 2018 | 819 | 2018 |
| Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites K Liu, M Goodman, S Muse, JS Smith, ED Buckler, J Doebley Genetics 165 (4), 2117-2128, 2003 | 741 | 2003 |
| HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ... Molecular biology and evolution 37 (1), 295-299, 2020 | 460 | 2020 |
| Relative rates of nucleotide substitution at the rbcl locus of monocotyledonous plants BS Gaut, SV Muse, WD Clark, MT Clegg Journal of molecular evolution 35, 292-303, 1992 | 366 | 1992 |
| A primer of genome science G Gibson, SV Muse Sinauer Associates, 2004 | 322 | 2004 |
| Site-to-site variation of synonymous substitution rates SK Pond, SV Muse Molecular biology and evolution 22 (12), 2375-2385, 2005 | 290 | 2005 |
| Testing for equality of evolutionary rates. SV Muse, BS Weir Genetics 132 (1), 269-276, 1992 | 271 | 1992 |
| Examining rates and patterns of nucleotide substitution in plants SV Muse Plant Molecular Biology 42, 25-43, 2000 | 264 | 2000 |
| Evolutionary analyses of DNA sequences subject to constraints of secondary structure. SV Muse Genetics 139 (3), 1429-1439, 1995 | 176 | 1995 |
| PowerMarker: new genetic data analysis software. Version 3.0 K Liu http://www. powermarker. net, 2005 | 158 | 2005 |
| Maintenance of pre-mRNA secondary structure by epistatic selection. DA Kirby, SV Muse, W Stephan Proceedings of the National Academy of Sciences 92 (20), 9047-9051, 1995 | 146 | 1995 |
| Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae). BS Gaut, LG Clark, JF Wendel, SV Muse Molecular Biology and Evolution 14 (7), 769-777, 1997 | 142 | 1997 |
| Estimating synonymous and nonsynonymous substitution rates. SV Muse Molecular biology and evolution 13 (1), 105-114, 1996 | 124 | 1996 |
| Comparing patterns of nucleotide substitution rates among chloroplast loci using the relative ratio test SV Muse, BS Gaut Genetics 146 (1), 393-399, 1997 | 102 | 1997 |
| Genomic analysis of closely related astroviruses E Strain, LA Kelley, S Schultz-Cherry, SV Muse, MD Koci Journal of Virology 82 (10), 5099-5103, 2008 | 100 | 2008 |
| Genome architecture drives protein evolution in ciliates RA Zufall, CL McGrath, SV Muse, LA Katz Molecular Biology and Evolution 23 (9), 1681-1687, 2006 | 89 | 2006 |
| Intragenic duplication and divergence in the spectrin superfamily of proteins. GH Thomas, EC Newbern, CC Korte, MA Bales, SV Muse, AG Clark, ... Molecular biology and evolution 14 (12), 1285-1295, 1997 | 87 | 1997 |
