Oliver Stegle
TitleCited byYear
A global reference for human genetic variation
1000 Genomes Project Consortium
Nature 526 (7571), 68, 2015
43242015
Transcriptome and genome sequencing uncovers functional variation in humans
T Lappalainen, M Sammeth, MR Friedländer, P AC‘t Hoen, J Monlong, ...
Nature 501 (7468), 506, 2013
11792013
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75, 2015
9022015
Whole-genome sequencing of multiple Arabidopsis thaliana populations
J Cao, K Schneeberger, S Ossowski, T Günther, S Bender, J Fitz, ...
Nature Genetics 43 (10), 956-963, 2011
8322011
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ...
Nature biotechnology 33 (2), 155, 2015
6132015
Computational and analytical challenges in single-cell transcriptomics
O Stegle, SA Teichmann, JC Marioni
Nature Reviews Genetics 16 (3), 133, 2015
5522015
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ...
Nature 477 (7365), 419-423, 2011
5272011
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
C Becker, J Hagmann, J Müller, D Koenig, O Stegle, K Borgwardt, ...
Nature 480 (7376), 245, 2011
4942011
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
SA Smallwood, HJ Lee, C Angermueller, F Krueger, H Saadeh, J Peat, ...
Nature methods 11 (8), 817, 2014
4692014
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium.
SMIII Consortium
Nature Biotechnology 32 (9), 903-914, 2014
4492014
Deep learning for computational biology
C Angermueller, T Pärnamaa, L Parts, O Stegle
Molecular systems biology 12 (7), 2016
4292016
Patterns of cis regulatory variation in diverse human populations
BE Stranger, SB Montgomery, AS Dimas, L Parts, O Stegle, CE Ingle, ...
PLoS genetics 8 (4), e1002639, 2012
4292012
Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
O Stegle, L Parts, M Piipari, J Winn, R Durbin
Nature protocols 7 (3), 500, 2012
3462012
Science forum: the human cell atlas
A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ...
Elife 6, e27041, 2017
3212017
Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters
BM Javierre, OS Burren, SP Wilder, R Kreuzhuber, SM Hill, S Sewitz, ...
Cell 167 (5), 1369-1384. e19, 2016
3112016
A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies
O Stegle, L Parts, R Durbin, J Winn
PLoS computational biology 6 (5), e1000770, 2010
2992010
Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity
C Angermueller, SJ Clark, HJ Lee, IC Macaulay, MJ Teng, TX Hu, ...
Nature methods 13 (3), 229, 2016
2422016
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, FP Casale, ...
elife 4, e05255, 2015
2002015
Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis
O Windram, P Madhou, S McHattie, C Hill, R Hickman, E Cooke, ...
The Plant Cell 24 (9), 3530-3557, 2012
1982012
Genetic drivers of epigenetic and transcriptional variation in human immune cells
L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ...
Cell 167 (5), 1398-1414. e24, 2016
1882016
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