| Wnt1 silences chemokine genes in dendritic cells and induces adaptive immune resistance in lung adenocarcinoma D Kerdidani, P Chouvardas, AR Arjo, I Giopanou, G Ntaliarda, YA Guo, ... Nature communications 10 (1), 1405, 2019 | 71* | 2019 |
| Inferring active regulatory networks from gene expression data using a combination of prior knowledge and enrichment analysis P Chouvardas, G Kollias, C Nikolaou BMC bioinformatics 17, 319-332, 2016 | 37 | 2016 |
| Genomic responses of mouse synovial fibroblasts during tumor necrosis factor–driven arthritogenesis greatly mimic those in human rheumatoid arthritis E Ntougkos, P Chouvardas, F Roumelioti, C Ospelt, M Frank‐Bertoncelj, ... Arthritis & rheumatology 69 (8), 1588-1600, 2017 | 28 | 2017 |
| Comorbid TNF-mediated heart valve disease and chronic polyarthritis share common mesenchymal cell-mediated aetiopathogenesis L Ntari, M Sakkou, P Chouvardas, I Mourouzis, A Prados, MC Denis, ... Annals of the Rheumatic Diseases 77 (6), 926-934, 2018 | 27 | 2018 |
| LnCompare: gene set feature analysis for human long non-coding RNAs J Carlevaro-Fita, L Liu, Y Zhou, S Zhang, P Chouvardas, R Johnson, J Li Nucleic acids research 47 (W1), W523-W529, 2019 | 22 | 2019 |
| Cigarette smoke–induced emphysema exhausts early cytotoxic CD8+ T cell responses against nascent lung cancer cells D Kerdidani, S Magkouta, P Chouvardas, V Karavana, K Glynos, ... The Journal of Immunology 201 (5), 1558-1569, 2018 | 22 | 2018 |
| Mesenchymal TNFR2 promotes the development of polyarthritis and comorbid heart valve stenosis M Sakkou, P Chouvardas, L Ntari, A Prados, K Moreth, H Fuchs, ... JCI insight 3 (7), 2018 | 22 | 2018 |
| Bladder cancer organoids as a functional system to model different disease stages and therapy response M Minoli, T Cantore, D Hanhart, M Kiener, T Fedrizzi, F La Manna, ... Nature Communications 14 (1), 2214, 2023 | 15 | 2023 |
| Multi-hallmark long noncoding RNA maps reveal non-small cell lung cancer vulnerabilities R Esposito, T Polidori, DF Meise, C Pulido-Quetglas, P Chouvardas, ... Cell genomics 2 (9), 2022 | 14 | 2022 |
| An integrative transcriptome analysis framework for drug efficacy and similarity reveals drug-specific signatures of anti-TNF treatment in a mouse model of inflammatory … N Karagianni, K Kranidioti, N Fikas, M Tsochatzidou, P Chouvardas, ... PLoS Computational Biology 15 (5), e1006933, 2019 | 14 | 2019 |
| Col6a1+/CD201+ mesenchymal cells regulate intestinal morphogenesis and homeostasis MT Melissari, A Henriques, C Tzaferis, A Prados, ME Sarris, N Chalkidi, ... Cellular and Molecular Life Sciences 79 (1), 1, 2022 | 13 | 2022 |
| The conserved long non-coding RNA CARMA regulates cardiomyocyte differentiation M Kay, BM Soltani, M Nemir, P Aghagolzadeh, I Pezzuto, P Chouvardas, ... Cardiovascular Research 118 (10), 2339-2353, 2022 | 11 | 2022 |
| Repurposing the antipsychotic drug amisulpride for targeting synovial fibroblast activation in arthritis D Papadopoulou, F Roumelioti, C Tzaferis, P Chouvardas, AK Pedersen, ... JCI insight 8 (9), 2023 | 6 | 2023 |
| Matching single cells across modalities with contrastive learning and optimal transport F Gossi, P Pati, P Chouvardas, AL Martinelli, M Kruithof-de Julio, ... Briefings in bioinformatics 24 (3), bbad130, 2023 | 6 | 2023 |
| Combination of subtherapeutic anti-TNF dose with dasatinib restores clinical and molecular arthritogenic profiles better than standard anti-TNF treatment L Ntari, C Nikolaou, K Kranidioti, D Papadopoulou, ... Journal of translational medicine 19 (1), 165, 2021 | 6 | 2021 |
| Assessment of the Cardiac Noncoding Transcriptome by Single-Cell RNA Sequencing Identifies FIXER, a Conserved Profibrogenic Long Noncoding RNA P Aghagolzadeh, I Plaisance, R Bernasconi, TA Treibel, ... Circulation 148 (9), 778-797, 2023 | 4 | 2023 |
| A transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification I Plaisance, P Chouvardas, Y Sun, M Nemir, P Aghagolzadeh, F Aminfar, ... Cardiovascular research 119 (6), 1361-1376, 2023 | 3 | 2023 |
| Transcriptomic data meta-analysis reveals common and injury model specific gene expression changes in the regenerating zebrafish heart MA Botos, P Arora, P Chouvardas, N Mercader Scientific Reports 13 (1), 5418, 2023 | 3 | 2023 |
| Υπολογιστική βιολογία Χ Νικολάου, Π Χουβαρδάς | 2 | 2016 |
| Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates B Dhaka, M Zimmerli, D Hanhart, MB Moser, H Guillen-Ramirez, S Mishra, ... Nucleic acids research, gkae075, 2024 | 1 | 2024 |
Christoforos NikolaouResearcher, Institute of Bioinnovation, BSRC "Alexander Fleming"Verified email at fleming.gr
