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Sergey Aganezov
Sergey Aganezov
Genomic Applications at Oxford Nanopore Technologies, Inc
Verified email at nanoporetech.com
Title
Cited by
Cited by
Year
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
16992022
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes
DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ...
Science 347 (6217), 1258522, 2015
5752015
Major impacts of widespread structural variation on gene expression and crop improvement in tomato
M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ...
Cell 182 (1), 145-161. e23, 2020
4952020
Complete genomic and epigenetic maps of human centromeres
N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ...
Science 376 (6588), eabl4178, 2022
2402022
A complete reference genome improves analysis of human genetic variation
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
Science 376 (6588), eabl3533, 2022
1832022
Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing
M Alonge, L Lebeigle, M Kirsche, K Jenike, S Ou, S Aganezov, X Wang, ...
Genome biology 23 (1), 258, 2022
1432022
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell Genomics 2 (5), 2022
1092022
Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing
M Alonge, L Lebeigle, M Kirsche, S Aganezov, X Wang, ZB Lippman, ...
BioRxiv, 2021.11. 18.469135, 2021
872021
Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
S Aganezov, S Goodwin, RM Sherman, FJ Sedlazeck, G Arun, S Bhatia, ...
Genome research 30 (9), 1258-1273, 2020
862020
Reconstruction of ancestral genomes in presence of gene gain and loss
P Avdeyev, S Jiang, S Aganezov, F Hu, MA Alekseyev
Journal of Computational Biology 23 (3), 150-164, 2016
752016
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 4794, 2020
572020
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
RM Waterhouse, S Aganezov, Y Anselmetti, J Lee, L Ruzzante, ...
BMC Biology 18 (1), 1, 2020
382020
Jasmine and Iris: population-scale structural variant comparison and analysis
M Kirsche, G Prabhu, R Sherman, B Ni, A Battle, S Aganezov, MC Schatz
Nature methods 20 (3), 408-417, 2023
322023
Jasmine: Population-scale structural variant comparison and analysis
M Kirsche, G Prabhu, R Sherman, B Ni, S Aganezov, MC Schatz
BioRxiv, 2021.05. 27.445886, 2021
242021
Scaffold assembly based on genome rearrangement analysis
S Aganezov, N Sitdykova, MA Alekseyev, AGC Consortium
Computational biology and chemistry 57, 46-53, 2015
202015
Reconstruction of clone-and haplotype-specific cancer genome karyotypes from bulk tumor samples
S Aganezov, BJ Raphael
Genome research 30 (9), 1274-1290, 2020
182020
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ...
Cell 186 (7), 1493-1511. e40, 2023
152023
The human origin recognition complex is essential for pre-RC assembly, mitosis, and maintenance of nuclear structure
HC Chou, K Bhalla, OEL Demerdesh, O Klingbeil, K Hanington, ...
Elife 10, e61797, 2021
142021
CAMSA: a tool for comparative analysis and merging of scaffold assemblies
SS Aganezov, MA Alekseyev
BMC bioinformatics 18, 41-50, 2017
112017
Multi-genome scaffold co-assembly based on the analysis of gene orders and genomic repeats
S Aganezov, MA Alekseyev
International Symposium on Bioinformatics Research and Applications, 237-249, 2016
112016
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