Lecture notes in computer science (including subseries lecture notes in artificial intelligence and lecture notes in bioinformatics): Preface M Abe, K Aoki, G Ateniese, R Avanzi, Z Beerliová, O Billet, A Biryukov, ... Lecture Notes in Computer Science (including subseries Lecture Notes in …, 2006 | 175* | 2006 |

The complexity of multiple sequence alignment with SP-score that is a metric P Bonizzoni, G Della Vedova Theoretical Computer Science 259 (1-2), 63-79, 2001 | 168 | 2001 |

The haplotyping problem: an overview of computational models and solutions P Bonizzoni, G Della Vedova, R Dondi, J Li Journal of Computer Science and Technology 18 (6), 675-688, 2003 | 153 | 2003 |

Reconciling a gene tree to a species tree under the duplication cost model P Bonizzoni, G Della Vedova, R Dondi Theoretical computer science 347 (1-2), 36-53, 2005 | 87 | 2005 |

ASPicDB: a database resource for alternative splicing analysis T Castrignanò, M D’Antonio, A Anselmo, D Carrabino, A D’Onorio De Meo, ... Bioinformatics 24 (10), 1300-1304, 2008 | 57 | 2008 |

ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences P Bonizzoni, R Rizzi, G Pesole BMC bioinformatics 6 (1), 1-16, 2005 | 50 | 2005 |

Experimenting an approximation algorithm for the LCS P Bonizzoni, G Della Vedova, G Mauri Discrete Applied Mathematics 110 (1), 13-24, 2001 | 46 | 2001 |

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing PL Martelli, M D’Antonio, P Bonizzoni, T Castrignano, AM D’Erchia, ... Nucleic acids research 39 (suppl_1), D80-D85, 2010 | 43 | 2010 |

HapCol: accurate and memory-efficient haplotype assembly from long reads Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni Bioinformatics 32 (11), 1610-1617, 2016 | 42 | 2016 |

On the approximation of correlation clustering and consensus clustering P Bonizzoni, G Della Vedova, R Dondi, T Jiang Journal of Computer and System Sciences 74 (5), 671-696, 2008 | 41 | 2008 |

Exemplar longest common subsequence P Bonizzoni, G Della Vedova, R Dondi, G Fertin, R Rizzi, S Vialette IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 535-543, 2007 | 41 | 2007 |

Variants of constrained longest common subsequence P Bonizzoni, G Della Vedova, R Dondi, Y Pirola Information Processing Letters 110 (20), 877-881, 2010 | 39 | 2010 |

Separating some splicing models P Bonizzoni, C Ferretti, G Mauri, R Zizza Information Processing Letters 79 (6), 255-259, 2001 | 37 | 2001 |

An approximation algorithm for the shortest common supersequence problem: an experimental analysis P Barone, P Bonizzoni, GD Vedova, G Mauri Proceedings of the 2001 ACM symposium on Applied computing, 56-60, 2001 | 36 | 2001 |

ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization T Castrignano, R Rizzi, IG Talamo, PDO De Meo, A Anselmo, P Bonizzoni, ... Nucleic Acids Research 34 (suppl_2), W440-W443, 2006 | 33 | 2006 |

The binary perfect phylogeny with persistent characters P Bonizzoni, C Braghin, R Dondi, G Trucco Theoretical computer science 454, 51-63, 2012 | 30 | 2012 |

Computational methods for alternative splicing prediction. P Bonizzoni, R Rizzi, G Pesole Briefings in functional genomics & proteomics 5 (1), 2006 | 30 | 2006 |

About infinite traces P Bonizzoni, G Mauri, G Pighizzini Università di Milano. Dipartimento di Scienze dell'Informazione, 1990 | 29 | 1990 |

On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria Journal of Computational Biology 23 (9), 718-736, 2016 | 24 | 2016 |

A linear-time algorithm for the perfect phylogeny haplotype problem P Bonizzoni Algorithmica 48 (3), 267-285, 2007 | 24 | 2007 |