Jacob Degner
TitleCited byYear
Understanding mechanisms underlying human gene expression variation with RNA sequencing
JK Pickrell, JC Marioni, AA Pai, JF Degner, BE Engelhardt, E Nkadori, ...
Nature 464 (7289), 768-772, 2010
12242010
DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
JT Bell, AA Pai, JK Pickrell, DJ Gaffney, R Pique-Regi, JF Degner, Y Gilad, ...
Genome biology 12 (1), R10, 2011
7392011
DNase I sensitivity QTLs are a major determinant of human expression variation
JF Degner, AA Pai, R Pique-Regi, JB Veyrieras, DJ Gaffney, JK Pickrell, ...
Nature 482 (7385), 390-394, 2012
5492012
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
R Pique-Regi, JF Degner, AA Pai, DJ Gaffney, Y Gilad, JK Pritchard
Genome research 21 (3), 447-455, 2011
4882011
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
JF Degner, JC Marioni, AA Pai, JK Pickrell, E Nkadori, Y Gilad, ...
Bioinformatics 25 (24), 3207, 2009
4592009
Identification of genetic variants that affect histone modifications in human cells
G McVicker, B van de Geijn, JF Degner, CE Cain, NE Banovich, A Raj, ...
Science 342 (6159), 747-749, 2013
3492013
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes
TA Castoe, APJ de Koning, KT Hall, DC Card, DR Schield, MK Fujita, ...
Proceedings of the National Academy of Sciences 110 (51), 20645-20650, 2013
2102013
Dissecting the regulatory architecture of gene expression QTLs
DJ Gaffney, JB Veyrieras, JF Degner, R Pique-Regi, AA Pai, GE Crawford, ...
Genome biology 13 (1), R7, 2012
1812012
Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels
NE Banovich, X Lan, G McVicker, B Van de Geijn, JF Degner, JD Blischak, ...
PLoS genetics 10 (9), 2014
1752014
The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels
AA Pai, CE Cain, O Mizrahi-Man, S De Leon, N Lewellen, JB Veyrieras, ...
PLoS genetics 8 (10), 2012
802012
Metabolic fright responses of different-sized largemouth bass (Micropterus salmoides) to two avian predators show variations in nonlethal energetic costs
SJ Cooke, J Steinmetz, JF Degner, EC Grant, DP Philipp
Canadian Journal of Zoology 81 (4), 699-709, 2003
672003
Association of prothrombin complex concentrate administration and hematoma enlargement in non–vitamin K antagonist oral anticoagulant–related intracerebral hemorrhage
ST Gerner, JB Kuramatsu, JA Sembill, MI SprŘgel, M Endres, ...
Annals of neurology 83 (1), 186-196, 2018
582018
Population genetics and conservation of the threatened southeastern beach mouse (Peromyscus polionotus niveiventris): subspecies and evolutionary units
JF Degner, IJ Stout, JD Roth, CL Parkinson
Conservation Genetics 8 (6), 1441-1452, 2007
402007
Promoter shape varies across populations and affects promoter evolution and expression noise
IE Schor, JF Degner, D Harnett, E Cannav˛, FP Casale, H Shim, ...
Nature genetics 49 (4), 550, 2017
352017
Genetic variants regulating expression levels and isoform diversity during embryogenesis
E Cannav˛, N Koelling, D Harnett, D Garfield, FP Casale, L Ciglar, ...
Nature 541 (7637), 402-406, 2017
322017
Fat frogs, mobile genes: unexpected phylogeographic patterns for the ornate chorus frog (Pseudacris ornata)
JF Degner, DM Silva, TD Hether, JM Daza, EA Hoffman
Molecular Ecology 19 (12), 2501-2515, 2010
182010
Are drug targets with genetic support twice as likely to be approved? Revised estimates of the impact of genetic support for drug mechanisms on the probability of drug approval
EA King, JW Davis, JF Degner
PLoS Genetics 15 (12), 2019
172019
Eight novel tetranucleotide and five cross‐species dinucleotide microsatellite loci for the ornate chorus frog (Pseudacris ornata)
JF Degner, TD Hether, EA Hoffman
Molecular ecology resources 9 (2), 622-624, 2009
82009
A new species of hanging-parrot (Aves: Psittacidae: Loriculus) from Camiguin Island, Philippines
JG Tello, JF Degner, JM Bates, DE Willard
Fieldiana Zoology 2006 (106), 49-57, 2006
82006
Identification of HLA-DRB1 association to adalimumab immunogenicity
M Liu, J Degner, JW Davis, KB Idler, A Nader, NM Mostafa, JF Waring
PloS one 13 (4), 2018
72018
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Articles 1–20