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The OpenMolcas Web: A Community-Driven Approach to Advancing Computational Chemistry
G Li Manni, I Fdez. Galván, A Alavi, F Aleotti, F Aquilante, J Autschbach, ...
Journal of chemical theory and computation 19 (20), 6933-6991, 2023
1042023
Evidence for a vibrational phase-dependent isotope effect on the photochemistry of vision
C Schnedermann, X Yang, M Liebel, KM Spillane, J Lugtenburg, ...
Nature chemistry 10 (4), 449-455, 2018
912018
Toward automatic rhodopsin modeling as a tool for high-throughput computational photobiology
F Melaccio, M del Carmen Marín, A Valentini, F Montisci, S Rinaldi, ...
Journal of Chemical Theory and Computation 12 (12), 6020-6034, 2016
722016
Probing the photodynamics of rhodopsins with reduced retinal chromophores
M Manathunga, X Yang, HL Luk, S Gozem, LM Frutos, A Valentini, ...
Journal of Chemical Theory and Computation 12 (2), 839-850, 2016
542016
Impact of electronic state mixing on the photoisomerization time scale of the retinal chromophore
M Manathunga, X Yang, Y Orozco-Gonzalez, M Olivucci
The Journal of Physical Chemistry Letters 8 (20), 5222-5227, 2017
372017
Quantum–classical simulations of rhodopsin reveal excited-state population splitting and its effects on quantum efficiency
X Yang, M Manathunga, S Gozem, J Léonard, T Andruniów, M Olivucci
Nature chemistry 14 (4), 441-449, 2022
352022
Frontiers in multiscale modeling of photoreceptor proteins
M Mroginski, S Adam, GS Amoyal, A Barnoy, A Bondar, VA Borin, ...
Photochemistry and photobiology 97 (2), 243-269, 2021
312021
Electronic State Mixing Controls the Photoreactivity of a Rhodopsin with all-trans Chromophore Analogues
M Manathunga, X Yang, M Olivucci
The journal of physical chemistry letters 9 (21), 6350-6355, 2018
252018
Towards the engineering of a photon-only two-stroke rotary molecular motor
M Filatov, M Paolino, R Pierron, A Cappelli, G Giorgi, J Léonard, ...
nature communications 13 (1), 6433, 2022
242022
Two-state, three-mode parametrization of the force field of a retinal chromophore model
E Marsili, MH Farag, X Yang, L De Vico, M Olivucci
The Journal of Physical Chemistry A 123 (9), 1710-1719, 2019
192019
Multistate multiconfiguration quantum chemical computation of the two-photon absorption spectra of bovine rhodopsin
S Gholami, L Pedraza-González, X Yang, AA Granovsky, IN Ioffe, ...
The journal of physical chemistry letters 10 (20), 6293-6300, 2019
162019
Web-ARM: a web-based interface for the automatic construction of QM/MM models of rhodopsins
L Pedraza-González, MDC Marín, AN Jorge, TD Ruck, X Yang, ...
Journal of chemical information and modeling 60 (3), 1481-1493, 2020
152020
Xanthopsin‐like systems via site‐specific click‐functionalization of a retinoic acid binding protein
G Tassone, M Paolino, C Pozzi, A Reale, L Salvini, G Giorgi, M Orlandini, ...
ChemBioChem 23 (1), e202100449, 2022
82022
On the automatic construction of QM/MM models for biological photoreceptors: rhodopsins as model systems
L Pedraza-González, MC Marín, L De Vico, X Yang, M Olivucci
QM/MM studies of light-responsive biological systems, 1-75, 2021
52021
Picosecond quantum-classical dynamics reveals that the coexistence of light-induced microbial and animal chromophore rotary motion modulates the isomerization quantum yield of …
R Palombo, L Barneschi, L Pedraza-González, X Yang, M Olivucci
Physical Chemistry Chemical Physics 26 (13), 10343-10356, 2024
22024
Comparative quantum-classical dynamics of natural and synthetic molecular rotors show how vibrational synchronization modulates the photoisomerization quantum efficiency
A Blanco-Gonzalez, M Manathunga, X Yang, M Olivucci
Nature Communications 15 (1), 3499, 2024
2024
Resonant multiphoton processes and excitation limits to structural dynamics
WJC Francis, H Grewal, AAC Wainwright, X Yang, M Olivucci, RJ Miller
Structural Dynamics 11 (2), 2024
2024
Comparative Quantum-Classical Dynamics of Natural and Synthetic Molecular Rotors Shows How Vibrational Synchronization Modulates Quantum Efficiency
M Olivucci, A Blanco-Gonzalez, M Manathunga, X Yang
2023
Probing the Photochemistry of Rhodopsin Through Population Dynamics Simulations
X Yang
Bowling Green State University, 2019
2019
Evidence for a vibrational phase isotope effect on the photochemistry of vision
C Schnedermann, X Yang, M Liebel, KM Spillane, J Lugtenburg, ...
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