Michael F. Lin
Michael F. Lin
independent (mlin.net LLC)
Verified email at mlin.net - Homepage
TitleCited byYear
An integrated encyclopedia of DNA elements in the human genome.
I Dunham, A Kundaje, SF Aldred, PJ Collins, CA Davis, F Doyle, ...
Nature 489 (7414), 57-74, 2012
9247*2012
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
92452012
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
IA Mitchell Guttman, M Garber, C French, MF Lin, D Feldser, M Huarte, ...
Nature 458 (7235), 223-227, 2009
33532009
GENCODE: The reference human genome annotation for The ENCODE Project
J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ...
Genome Research 22 (9), 1760-1774, 2012
28922012
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-218, 2007
1805*2007
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
11022011
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
T Hung, Y Wang, MF Lin, AK Koegel, Y Kotake, GD Grant, HM Horlings, ...
Nature genetics 43 (7), 621-629, 2011
8792011
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
8632011
Evolution of pathogenicity and sexual reproduction in eight Candida genomes
G Butler, MD Rasmussen, MF Lin, MAS Santos, S Sakthikumar, CA Munro, ...
Nature 459 (7247), 657-662, 2009
8312009
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787, 2010
7682010
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...
Nature 450 (7167), 219-232, 2007
6272007
Distinguishing protein-coding and noncoding genes in the human genome
M Clamp, B Fry, M Kamal, X Xie, J Cuff, MF Lin, M Kellis, K Lindblad-Toh, ...
Proceedings of the National Academy of Sciences 104 (49), 19428, 2007
6102007
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
A Pauli, E Valen, MF Lin, M Garber, NL Vastenhouw, JZ Levin, L Fan, ...
Genome Research 22 (3), 577-591, 2012
5912012
PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
MF Lin, I Jungreis, M Kellis
Bioinformatics 27 (13), i275, 2011
5422011
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
KD Pruitt, J Harrow, RA Harte, C Wallin, M Diekhans, DR Maglott, ...
Genome research 19 (7), 1316-1323, 2009
5082009
Comparative functional genomics of the fission yeasts
N Rhind, Z Chen, M Yassour, DA Thompson, BJ Haas, N Habib, ...
Science 332 (6032), 930, 2011
3802011
Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone
DJ Park, G Dudas, S Wohl, A Goba, SLM Whitmer, KG Andersen, ...
Cell 161 (7), 1516-1526, 2015
1992015
Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes
MF Lin, JW Carlson, MA Crosby, BB Matthews, C Yu, S Park, KH Wan, ...
Genome Research 17 (12), 1823-1836, 2007
1452007
Evidence of abundant stop codon readthrough in Drosophila and other Metazoa
I Jungreis, MF Lin, R Spokony, CS Chan, N Negre, A Victorsen, KP White, ...
Genome Research, 2011
1372011
Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology, 2018
822018
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Articles 1–20