| Engineering the oleaginous yeast Yarrowia lipolytica to produce the aroma compound β-ionone JJ Czajka, JA Nathenson, VT Benites, EEK Baidoo, Q Cheng, Y Wang, ... Microbial Cell Factories 17 (138), 2018 | 85 | 2018 |
| An Evolution-Based Approach to De Novo Protein Design and Case Study on Mycobacterium tuberculosis P Mitra, D Shultis, JR Brender, J Czajka, D Marsh, F Gray, T Cierpicki, ... PLoS computational biology 9 (10), e1003298, 2013 | 48 | 2013 |
| A concerted systems biology analysis of phenol metabolism in Rhodococcus opacus PD630 GW Roell, RR Carr, T Campbell, Z Shang, WR Henson, JJ Czajka, ... Metabolic engineering 55, 120-130, 2019 | 46 | 2019 |
| Synthetic biology for manufacturing chemicals: constraints drive the use of non-conventional microbial platforms J Czajka, Q Wang, Y Wang, YJ Tang Applied microbiology and biotechnology 101, 7427-7434, 2017 | 36 | 2017 |
| Integrated knowledge mining, genome-scale modeling, and machine learning for predicting Yarrowia lipolytica bioproduction JJ Czajka, T Oyetunde, YJ Tang Metabolic Engineering 67, 227-236, 2021 | 34 | 2021 |
| Biosynthesis of terpene compounds using the non-model yeast Yarrowia lipolytica: grand challenges and a few perspectives AM Worland, JJ Czajka, Y Li, Y Wang, YJ Tang, WW Su Current opinion in biotechnology 64, 134-140, 2020 | 34 | 2020 |
| Cyanobacterial carboxysome mutant analysis reveals the influence of enzyme compartmentalization on cellular metabolism and metabolic network rigidity MH Abernathy, JJ Czajka, DK Allen, NC Hill, JC Cameron, YJ Tang Metabolic engineering 54, 222-231, 2019 | 32 | 2019 |
| Model metabolic strategy for heterotrophic bacteria in the cold ocean based on Colwellia psychrerythraea 34H JJ Czajka, MH Abernathy, VT Benites, EEK Baidoo, JW Deming, YJ Tang Proceedings of the National Academy of Sciences 115 (49), 12507-12512, 2018 | 27 | 2018 |
| Application of stable isotope tracing to elucidate metabolic dynamics during Yarrowia lipolytica α-ionone fermentation JJ Czajka, S Kambhampati, YJ Tang, Y Wang, DK Allen IScience 23 (2), 100854, 2020 | 26* | 2020 |
| Changing the apoptosis pathway through evolutionary protein design D Shultis, P Mitra, X Huang, J Johnson, NA Khattak, F Gray, C Piper, ... Journal of molecular biology 431 (4), 825-841, 2019 | 18 | 2019 |
| Analysis of Yarrowia lipolytica growth, catabolism, and terpenoid biosynthesis during utilization of lipid-derived feedstock AM Worland, JJ Czajka, Y Xing, WF Harper Jr, A Moore, Z Xiao, Z Han, ... Metabolic Engineering Communications 11, e00130, 2020 | 15 | 2020 |
| Tuning a high performing multiplexed-CRISPRi Pseudomonas putida strain to further enhance indigoidine production JJ Czajka, D Banerjee, T Eng, J Menasalvas, C Yan, NM Munoz, ... Metabolic Engineering Communications 15, e00206, 2022 | 13* | 2022 |
| Mitigation of host cell mutations and regime shift during microbial fermentation: a perspective from flux memory JJ Czajka, B Okumuş, MAG Koffas, M Blenner, YJ Tang Current Opinion In Biotechnology 66, 227-235, 2020 | 8 | 2020 |
| Rapid and robust squashed spore/colony PCR of industrially important fungi G Yuan, JJ Czajka, Z Dai, D Hu, KR Pomraning, BA Hofstad, J Kim, ... Fungal Biology and Biotechnology 10 (1), 15, 2023 | 2 | 2023 |
| BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale TWH Backman, C Schenk, T Radivojevic, D Ando, J Singh, JJ Czajka, ... PLoS Computational Biology 19 (11), e1011111, 2023 | 1 | 2023 |
| An algal-bacterial symbiotic system of carbon fixation using formate as a carbon source Y Zheng, JJ Czajka, C Daiek, Z Yang, L Sun, YJ Tang, Y Liu, W Liao Algal Research 72, 103103, 2023 | 1 | 2023 |
| Metabolite patterns reveal regulatory responses to genetic perturbations T Oyetunde, J Czajka, G Wu, C Lo, Y Tang arXiv preprint arXiv:1701.01744, 2017 | 1 | 2017 |
| Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces JJ Czajka, Y Han, J Kim, SJ Mondo, BA Hofstad, AL Robles, S Haridas, ... Frontiers in Bioengineering and Biotechnology 12, 1356551, 2024 | | 2024 |
| Process control for 3-hydroxypropionic acid production by engineered strains of aspergillus niger KR Pomraning, Z Dai, JK Magnuson, BA Hofstad, JJ Czajka, J Kim, ... US Patent App. 18/365,091, 2024 | | 2024 |
| Simple and Effective Squash-PCR for Rapid Genotyping of Industrial Microalgae G Yuan, S Gao, JJ Czajka, Z Dai, KR Pomraning, RD Duong, BA Hofstad, ... Life 14 (1), 115, 2024 | | 2024 |
