| Development and validation of a novel integrated clinical-genomic risk group classification for localized prostate cancer DE Spratt, J Zhang, M Santiago-Jiménez, RT Dess, JW Davis, RB Den, ... Journal of Clinical Oncology 36 (6), 581-590, 2018 | 212 | 2018 |
| YesWorkflow: a user-oriented, language-independent tool for recovering workflow information from scripts T McPhillips, T Song, T Kolisnik, S Aulenbach, K Belhajjame, K Bocinsky, ... arXiv preprint arXiv:1502.02403, 2015 | 149 | 2015 |
| Ability of a genomic classifier to predict metastasis and prostate cancer-specific mortality after radiation or surgery based on needle biopsy specimens PL Nguyen, Z Haddad, AE Ross, NE Martin, S Deheshi, LLC Lam, ... European urology 72 (5), 845-852, 2017 | 116 | 2017 |
| The diverse genomic landscape of clinically low-risk prostate cancer MR Cooperberg, N Erho, JM Chan, FY Feng, N Fishbane, SG Zhao, ... European urology 74 (4), 444-452, 2018 | 83 | 2018 |
| An inhaled dose of budesonide induces genes involved in transcription and signaling in the human airways: enhancement of anti‐and proinflammatory effector genes R Leigh, MM Mostafa, EM King, CF Rider, S Shah, C Dumonceaux, ... Pharmacology Research & Perspectives 4 (4), 2016 | 64 | 2016 |
| Utilization of biopsy-based genomic classifier to predict distant metastasis after definitive radiation and short-course ADT for intermediate and high-risk prostate cancer PL Nguyen, NE Martin, V Choeurng, B Palmer-Aronsten, T Kolisnik, ... Prostate cancer and prostatic diseases 20 (2), 186-192, 2017 | 58 | 2017 |
| Low PCA3 expression is a marker of poor differentiation in localized prostate tumors: exploratory analysis from 12,076 patients M Alshalalfa, GW Verhaegh, EA Gibb, M Santiago-Jiménez, N Erho, ... Oncotarget 8 (31), 50804, 2017 | 48 | 2017 |
| Identifying important microbial and genomic biomarkers for differentiating right-versus left-sided colorectal cancer using random forest models T Kolisnik, AK Sulit, S Schmeier, F Frizelle, R Purcell, A Smith, O Silander BMC cancer 23 (1), 647, 2023 | 10 | 2023 |
| MetaFunc: taxonomic and functional analyses of high throughput sequencing for microbiomes AK Sulit, T Kolisnik, FA Frizelle, R Purcell, S Schmeier Gut Microbiome 4, e4, 2023 | 7 | 2023 |
| A p53 transcriptional signature in primary and metastatic cancers derived using machine learning F Keshavarz-Rahaghi, E Pleasance, T Kolisnik, SJM Jones Frontiers in Genetics 13, 987238, 2022 | 4 | 2022 |
| Reusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysis N Cormier, T Kolisnik, M Bieda BMC bioinformatics 17, 1-13, 2016 | 4 | 2016 |
| pyRforest: A comprehensive R package for genomic data analysis featuring scikit-learn Random Forests in R T Kolisnik, F Keshavarz-Rahaghi, RV Purcell, ANH Smith, OK Silander bioRxiv, 2024.06. 09.598161, 2024 | 2 | 2024 |
| The diverse genomic landscape of low-risk prostate cancer. MR Cooperberg, N Erho, JM Chan, FYC Feng, JE Cowan, K Ong, ... Journal of Clinical Oncology 35 (6_suppl), 72-72, 2017 | 2 | 2017 |
| CHARACTERIZATION OF THE GENOMIC LANDSCAPE OF A PROSPECTIVE MUSCLE-INVASIVE BLADDER CANCER COHORT WITH A FOCUS ON SECONDARY VARIANT HISTOLOGY: PD15-01 V Narayan, E Gibb, N Erho, A Cronican, T Kolisnik, E Davicioni, B Konety Journal of Urology 199 (4), e310, 2018 | | 2018 |
| The diverse genomic landscape of low− risk prostate cancer. MR Cooperberg, N Erho, JM Chan, FY Feng, S Zhao, J Simko, JE Cowan, ... Journal of Clinical Oncology 36 (6_suppl), 74-74, 2018 | | 2018 |
| PNFBA-09 THE DIVERSE GENOMIC LANDSCAPE OF LOW-RISK PROSTATE CANCER MR Cooperberg, N Erho, JM Chan, FY Feng, JE Cowan, K Ong, ... The Journal of Urology 197 (4S), e912-e912, 2017 | | 2017 |
| PROSPECTIVE STUDY OF BIOPSY DECIPHER SCORES IN POTENTIAL CANDIDATES FOR ACTIVE SURVEILLANCE: PD28-11 S Loeb, EA Klein, Z Haddad, M Santiago-Jiménez, LLC Lam, ... Journal of Urology 197 (4), e522, 2017 | | 2017 |
| The Use of a Biopsy-Based Genomic Classifier to Predict the Risk of Distant Metastasis After Definitive Radiation and Short-Course Androgen Deprivation Therapy for Intermediate … PL Nguyen, NE Martin, BJ Palmer-Aronsten, V Choeurng, T Kolisnik, ... International Journal of Radiation Oncology, Biology, Physics 96 (2), S113-S114, 2016 | | 2016 |
