Zizhen Yao
TitleCited byYear
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
B Tasic, V Menon, TN Nguyen, TK Kim, T Jarsky, Z Yao, B Levi, LT Gray, ...
Nature neuroscience 19 (2), 335, 2016
6002016
Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming
Y Cao, Z Yao, D Sarkar, M Lawrence, GJ Sanchez, MH Parker, ...
Developmental cell 18 (4), 662-674, 2010
3732010
CMfinder—a covariance model based RNA motif finding algorithm
Z Yao, Z Weinberg, WL Ruzzo
Bioinformatics 22 (4), 445-452, 2005
3192005
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
Z Weinberg, JE Barrick, Z Yao, A Roth, JN Kim, J Gore, JX Wang, ER Lee, ...
Nucleic acids research 35 (14), 4809-4819, 2007
2972007
DUX4 activates germline genes, retroelements, and immune mediators: implications for facioscapulohumeral dystrophy
LN Geng, Z Yao, L Snider, AP Fong, JN Cech, JM Young, ...
Developmental cell 22 (1), 38-51, 2012
2462012
Canonical genetic signatures of the adult human brain
M Hawrylycz, JA Miller, V Menon, D Feng, T Dolbeare, ...
Nature neuroscience 18 (12), 1832, 2015
1702015
Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
AB Rosenberg, CM Roco, RA Muscat, A Kuchina, P Sample, Z Yao, ...
Science 360 (6385), 176-182, 2018
1622018
Shared and distinct transcriptomic cell types across neocortical areas
B Tasic, Z Yao, LT Graybuck, KA Smith, TN Nguyen, D Bertagnolli, ...
Nature 563 (7729), 72, 2018
1412018
Differential genomic targeting of the transcription factor TAL1 in alternate haematopoietic lineages
CG Palii, C Perez‐Iratxeta, Z Yao, Y Cao, F Dai, J Davison, H Atkins, ...
The EMBO journal 30 (3), 494-509, 2011
1332011
A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism
EE Regulski, RH Moy, Z Weinberg, JE Barrick, Z Yao, WL Ruzzo, ...
Molecular microbiology 68 (4), 918-932, 2008
1222008
Fixed single-cell transcriptomic characterization of human radial glial diversity
ER Thomsen, JK Mich, Z Yao, RD Hodge, AM Doyle, S Jang, SI Shehata, ...
Nature methods 13 (1), 87, 2016
1102016
Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions
E Torarinsson, Z Yao, ED Wiklund, JB Bramsen, C Hansen, J Kjems, ...
Genome research 18 (2), 242-251, 2008
992008
The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches
Z Weinberg, EE Regulski, MC Hammond, JE Barrick, Z Yao, WL Ruzzo, ...
Rna 14 (5), 822-828, 2008
932008
DUX4-induced gene expression is the major molecular signature in FSHD skeletal muscle
Z Yao, L Snider, J Balog, RJLF Lemmers, SM Van Der Maarel, R Tawil, ...
Human molecular genetics 23 (20), 5342-5352, 2014
922014
A computational pipeline for high-throughput discovery of cis-regulatory noncoding RNA in prokaryotes
Z Yao, J Barrick, Z Weinberg, S Neph, R Breaker, M Tompa, WL Ruzzo
PLoS computational biology 3 (7), e126, 2007
892007
Genetic and epigenetic determinants of neurogenesis and myogenesis
AP Fong, Z Yao, JW Zhong, Y Cao, WL Ruzzo, RC Gentleman, ...
Developmental cell 22 (4), 721-735, 2012
882012
DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis
JM Young, JL Whiddon, Z Yao, B Kasinathan, L Snider, LN Geng, J Balog, ...
PLoS genetics 9 (11), e1003947, 2013
792013
Intrinsic epigenetic regulation of the D4Z4 macrosatellite repeat in a transgenic mouse model for FSHD
YD Krom, PE Thijssen, JM Young, B den Hamer, J Balog, Z Yao, L Maves, ...
PLoS genetics 9 (4), e1003415, 2013
762013
De novo prediction of structured RNAs from genomic sequences
J Gorodkin, IL Hofacker, E Torarinsson, Z Yao, JH Havgaard, WL Ruzzo
Trends in biotechnology 28 (1), 9-19, 2010
732010
Tissue-specific splicing of a ubiquitously expressed transcription factor is essential for muscle differentiation
S Sebastian, H Faralli, Z Yao, P Rakopoulos, C Palii, Y Cao, K Singh, ...
Genes & development 27 (11), 1247-1259, 2013
692013
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Articles 1–20