Shahin Mohammadi
Shahin Mohammadi
MIT / Broad Institute of MIT and Harvard
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
Single-cell transcriptomic analysis of Alzheimer’s disease
H Mathys, J Davila-Velderrain, Z Peng, F Gao, S Mohammadi, JZ Young, ...
Nature 570 (7761), 332-337, 2019
5562019
Kavosh: a new algorithm for finding network motifs
ZRM Kashani, H Ahrabian, E Elahi, A Nowzari-Dalini, ES Ansari, S Asadi, ...
BMC bioinformatics 10 (1), 1-12, 2009
2392009
Network similarity decomposition (nsd): A fast and scalable approach to network alignment
G Kollias, S Mohammadi, A Grama
IEEE Transactions on Knowledge and Data Engineering 24 (12), 2232-2243, 2011
722011
Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration
M Menon, S Mohammadi, J Davila-Velderrain, BA Goods, TD Cadwell, ...
Nature communications 10 (1), 1-9, 2019
652019
A Critical Survey of Deconvolution Methods for Separating Cell-Types in Complex Tissues
S Mohammadi, N Zuckerman, A Goldsmith, A Grama
Proceedings of IEEE, Special Issue on Principles and Applications of Science …, 2016
472016
Scope and limitations of yeast as a model organism for studying human tissue-specific pathways
S Mohammadi, B Saberidokht, S Subramaniam, A Grama
BMC systems biology 9 (1), 1-22, 2015
402015
A geometric approach to characterize the functional identity of single cells
S Mohammadi, V Ravindra, DF Gleich, A Grama
Nature communications 9 (1), 1-10, 2018
352018
Triangular Alignment (TAME): A Tensor-based Approach for Higher-order Network Alignment
S Mohammadi, DF Gleich, TG Kolda, A Grama
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1-1, 2016
292016
Cell type-specific transcriptomics reveals that mutant Huntingtin leads to mitochondrial RNA release and neuronal innate immune activation
H Lee, RJ Fenster, SS Pineda, WS Gibbs, S Mohammadi, ...
Neuron 107 (5), 891-908. e8, 2020
282020
Reconstruction of cell-type-specific interactomes at single-cell resolution
S Mohammadi, J Davila-Velderrain, M Kellis
Cell systems 9 (6), 559-568. e4, 2019
272019
Low rank spectral network alignment
H Nassar, N Veldt, S Mohammadi, A Grama, DF Gleich
Proceedings of the 2018 World Wide Web Conference, 619-628, 2018
232018
A fast approach to global alignment of protein-protein interaction networks
G Kollias, M Sathe, S Mohammadi, A Grama
BMC research notes 6 (1), 1-11, 2013
212013
Author Correction: Single-cell transcriptomic analysis of Alzheimer’s disease
H Mathys, J Davila-Velderrain, Z Peng, F Gao, S Mohammadi, JZ Young, ...
Nature 571 (7763), E1-E1, 2019
172019
Biological network alignment
S Mohammadi, A Grama
Functional coherence of molecular networks in Bioinformatics, 97-136, 2012
132012
A convex optimization approach for identification of human tissue-specific interactomes
S Mohammadi, A Grama
Bioinformatics 32 (12), 2016
122016
A multiresolution framework to characterize single-cell state landscapes
S Mohammadi, J Davila-Velderrain, M Kellis
Nature communications 11 (1), 1-14, 2020
102020
Context-specific recommendation system for predicting similar pubmed articles
S Mohammadi, S Kylasa, G Kollias, A Grama
2016 IEEE 16th International Conference on Data Mining Workshops (ICDMW …, 2016
102016
DECODE-ing sparsity patterns in single-cell RNA-seq
S Mohammadi, J Davila-Velderrain, M Kellis, A Grama
bioRxiv, 241646, 2018
62018
Multi-resolution single-cell state characterization via joint archetypal/network analysis
S Mohammadi, J Davila-Velderrain, M Kellis
BioRxiv, 746339, 2019
52019
Inferring the effective TOR-dependent network: a computational study in yeast
S Mohammadi, S Subramaniam, A Grama
BMC systems biology 7 (1), 1-18, 2013
52013
The system can't perform the operation now. Try again later.
Articles 1–20