Roberto Pagliarini
Roberto Pagliarini
IRCCS Ospedale San Raffaele
Verified email at hsr.it
Title
Cited by
Cited by
Year
Dissection of metabolic reprogramming in polycystic kidney disease reveals coordinated rewiring of bioenergetic pathways
C Podrini, I Rowe, R Pagliarini, ASH Costa, M Chiaravalli, I Di Meo, H Kim, ...
Communications biology 1 (1), 1-14, 2018
272018
MP modelling of glucose-insulin interactions in the intravenous glucose tolerance test
V Manca, L Marchetti, R Pagliarini
Natural Computing for Simulation and Knowledge Discovery, 171-183, 2014
272014
A photosynthetic process modelled by a metabolic P system
V Manca, R Pagliarini, S Zorzan
Natural Computing 8 (4), 847-864, 2009
242009
In silico modeling of liver metabolism in a human disease reveals a key enzyme for histidine and histamine homeostasis
R Pagliarini, R Castello, F Napolitano, R Borzone, P Annunziata, ...
Cell reports 15 (10), 2292-2300, 2016
192016
Data analysis pipeline from laboratory to MP models
A Castellini, G Franco, R Pagliarini
Natural Computing 10 (1), 55-76, 2011
182011
mTORC1 upregulation leads to accumulation of the oncometabolite fumarate in a mouse model of renal cell carcinoma
L Drusian, EA Nigro, V Mannella, R Pagliarini, M Pema, ASH Costa, ...
Cell reports 24 (5), 1093-1104. e6, 2018
152018
Metabolic P systems: a discrete model for biological dynamics
V Manca, A Castellini, G Franco, L Marchetti, R Pagliarini
Chinese Journal of Electronics 22 (4), 717-723, 2013
132013
A genome-scale modeling approach to study inborn errors of liver metabolism: toward an in silico patient
R Pagliarini, D di Bernardo
Journal of Computational Biology 20 (5), 383-397, 2013
122013
Regulation and covering problems in MP systems
G Franco, V Manca, R Pagliarini
International Workshop on Membrane Computing, 242-251, 2009
72009
MP modelling for systems biology: two case studies
L Marchetti, V Manca, R Pagliarini, A Bollig-Fischer
Applications of membrane computing in systems and synthetic biology, 223-245, 2014
62014
An algorithm for initial fluxes of metabolic P systems
R Pagliarini, G Franco, V Manca
INTERNATIONAL JOURNAL OF COMPUTERS COMMUNICATIONS & CONTROL 4 (3), 263-272, 2009
62009
Toward an MP model of non-photochemical quenching
V Manca, R Pagliarini, S Zorzan
International Workshop on Membrane Computing, 299-310, 2008
32008
Combining flux balance analysis and model checking for metabolic network validation and analysis
R Pagliarini, M Sangiovanni, A Peron, D Di Bernardo
Natural Computing 14 (3), 341-354, 2015
22015
An analysis of correlative and static causality in P systems
R Pagliarini, O Agrigoroaiei, G Ciobanu, V Manca
International Conference on Membrane Computing, 323-341, 2012
22012
Metaplab 1.1 user guide
V Manca, A Castellini, G Franco, L Marchetti, R Pagliarini
Url: http://mplab. sci. univr. it, 2009
22009
In SILICO Simulations Predict a Causative Link Between Increased Glycolysis and Metabolic Reprogramming in Autosomal Dominant Polycystic Kidney Disease
R Pagliarini, A Boletta
2019 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2019
2019
IN-SILICO MODELLING OF PRIMARY HYPEROXALURIA TYPE 1, A HUMAN INBORN ERROR OF LIVER METABOLISM, UNRAVELS A KEY ENZYME FOR HISTAMINE HOMEOSTASIS
R Pagliarini, R Castello, R Borzone, P Annunziata, G Mandrile, ...
INFLAMMATION RESEARCH 64, S41-S41, 2015
2015
Differential Equation Based Reverse-Engineering Algorithms: Pros and Cons
G Gambardella, R Pagliarini, F Gregoretti, G Oliva, D Di Bernardo
Gene Network Inference, 49-61, 2013
2013
Linking Bistable Dynamics to Metabolic P Systems
R Pagliarini, L Bianco, V Manca, C Bessant
Proceedings of the Eighth Brainstorming Week on Membrane Computing, 205-218 …, 2010
2010
Tutorial: Log-gain plugin for flux discovery by MetaPlab
R Pagliarini, A Castellini
2009
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Articles 1–20