| < i> Listeria monocytogenes</i> lineages: Genomics, evolution, ecology, and phenotypic characteristics RH Orsi, HC Bakker, M Wiedmann International Journal of Medical Microbiology 301 (2), 79-96, 2011 | 848 | 2011 |
| Listeria marthii sp. nov., isolated from the natural environment, Finger Lakes National Forest LM Graves, LO Helsel, AG Steigerwalt, RE Morey, MI Daneshvar, SE Roof, ... International journal of systematic and evolutionary microbiology 60 (6 …, 2010 | 348 | 2010 |
| Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss HC den Bakker, CA Cummings, V Ferreira, P Vatta, RH Orsi, L Degoricija, ... BMC genomics 11 (1), 688, 2010 | 221 | 2010 |
| SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data S Zhang, HC Den Bakker, S Li, J Chen, BA Dinsmore, C Lane, AC Lauer, ... Applied and environmental microbiology 85 (23), e01746-19, 2019 | 210 | 2019 |
| Genomic epidemiology: whole-genome-sequencing–powered surveillance and outbreak investigation of foodborne bacterial pathogens X Deng, HC den Bakker, RS Hendriksen Annual review of food science and technology 7, 353-374, 2016 | 195 | 2016 |
| Listeria floridensis sp. nov., Listeria aquatica sp. nov., Listeria cornellensis sp. nov., Listeria riparia sp. nov. and Listeria grandensis sp. nov., from agricultural and … HC den Bakker, S Warchocki, EM Wright, AF Allred, C Ahlstrom, ... International journal of systematic and evolutionary microbiology 64 (Pt_6 …, 2014 | 187* | 2014 |
| Listeria booriae sp. nov. and Listeria newyorkensis sp. nov., from food processing environments in the USA D Weller, A Andrus, M Wiedmann, HC den Bakker International journal of systematic and evolutionary microbiology 65 (Pt_1 …, 2015 | 186 | 2015 |
| Identification and characterization of psychrotolerant sporeformers associated with fluid milk production and processing RA Ivy, ML Ranieri, NH Martin, HC den Bakker, BM Xavier, M Wiedmann, ... Applied and environmental microbiology 78 (6), 1853-1864, 2012 | 182 | 2012 |
| Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis HC Den Bakker, MW Allard, D Bopp, EW Brown, J Fontana, Z Iqbal, ... Emerging infectious diseases 20 (8), 1306, 2014 | 177 | 2014 |
| Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica HC den Bakker, AIM Switt, G Govoni, CA Cummings, ML Ranieri, ... BMC genomics 12 (1), 425, 2011 | 173 | 2011 |
| Ultrafast search of all deposited bacterial and viral genomic data P Bradley, HC Den Bakker, EPC Rocha, G McVean, Z Iqbal Nature biotechnology 37 (2), 152-159, 2019 | 161* | 2019 |
| Dissemination of the mcr-1 colistin resistance gene HE Webb, SA Granier, M Marault, Y Millemann, HC den Bakker, ... The Lancet Infectious Diseases 16 (2), 144-145, 2016 | 160 | 2016 |
| Whole-genome sequencing allows for improved identification of persistent Listeria monocytogenes in food-associated environments MJ Stasiewicz, HF Oliver, M Wiedmann, HC den Bakker Applied and environmental microbiology 81 (17), 6024-6037, 2015 | 159 | 2015 |
| Mashtree: a rapid comparison of whole genome sequence files LS Katz, T Griswold, SS Morrison, JA Caravas, S Zhang, HC den Bakker, ... Journal of Open Source Software 4 (44), 2019 | 141 | 2019 |
| Lineage specific recombination rates and microevolution in Listeria monocytogenes HC Den Bakker, X Didelot, ED Fortes, KK Nightingale, M Wiedmann BMC Evolutionary Biology 8 (1), 277, 2008 | 128 | 2008 |
| A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed … HC den Bakker, AI Moreno Switt, CA Cummings, K Hoelzer, L Degoricija, ... Applied and environmental microbiology 77 (24), 8648-8655, 2011 | 125* | 2011 |
| Evolution and host specificity in the ectomycorrhizal genus Leccinum HC Den Bakker, GC Zuccarello, TH Kuyper, ME Noordeloos New Phytologist 163 (1), 201-215, 2004 | 112 | 2004 |
| Comparison of typing methods with a new procedure based on sequence characterization for Salmonella serovar prediction ML Ranieri, C Shi, AI Moreno Switt, HC Den Bakker, M Wiedmann Journal of clinical microbiology 51 (6), 1786-1797, 2013 | 111 | 2013 |
| Whole-genome sequencing of drug-resistant Salmonella enterica isolates from dairy cattle and humans in New York and Washington states reveals source and geographic associations LM Carroll, M Wiedmann, H den Bakker, J Siler, S Warchocki, D Kent, ... Applied and environmental microbiology 83 (12), e00140-17, 2017 | 104 | 2017 |
| Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages X Deng, PT Desai, HC den Bakker, M Mikoleit, B Tolar, E Trees, ... Emerging Infectious Diseases 20 (9), 1481, 2014 | 103 | 2014 |
Martin WiedmannGellert Family Professor of Food Safety, Cornell UniversityVerified email at cornell.edu
