Bill Andreopoulos
Bill Andreopoulos
Data scientist, DOE Joint Genome Institute, Lawrence Berkeley National Lab
Verified email at lbl.gov
Title
Cited by
Cited by
Year
Data classification
CC Aggarwal
Data Mining, 285-344, 2015
19792015
A roadmap of clustering algorithms: finding a match for a biomedical application
B Andreopoulos, A An, X Wang, M Schroeder
Briefings in bioinformatics 10 (3), 297-314, 2009
2462009
Unraveling protein networks with power graph analysis
L Royer, M Reimann, B Andreopoulos, M Schroeder
PLoS Comput Biol 4 (7), e1000108, 2008
1602008
Widespread adenine N6-methylation of active genes in fungi
SJ Mondo, RO Dannebaum, RC Kuo, KB Louie, AJ Bewick, K LaButti, ...
Nature genetics 49 (6), 964-968, 2017
1582017
Megaphylogeny resolves global patterns of mushroom evolution
T Varga, K Krizsán, C Földi, B Dima, M Sánchez-García, ...
Nature ecology & evolution 3 (4), 668-678, 2019
652019
Next generation sequencing data of a defined microbial mock community
E Singer, B Andreopoulos, RM Bowers, J Lee, S Deshpande, J Chiniquy, ...
Scientific data 3 (1), 1-8, 2016
512016
Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy
D Alexopoulou, B Andreopoulos, H Dietze, A Doms, F Gandon, ...
BMC bioinformatics 10 (1), 1-15, 2009
452009
Leveraging single-cell genomics to expand the fungal tree of life
SR Ahrendt, CA Quandt, D Ciobanu, A Clum, A Salamov, B Andreopoulos, ...
Nature microbiology 3 (12), 1417-1428, 2018
432018
Clustering large software systems at multiple layers
B Andreopoulos, A An, V Tzerpos, X Wang
Information and Software Technology 49 (3), 244-254, 2007
392007
Clustering by common friends finds locally significant proteins mediating modules
B Andreopoulos, A An, X Wang, M Faloutsos, M Schroeder
Bioinformatics 23 (9), 1124-1131, 2007
372007
Hierarchical density-based clustering of categorical data and a simplification
B Andreopoulos, A An, X Wang
Pacific-Asia Conference on Knowledge Discovery and Data Mining, 11-22, 2007
332007
101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens
S Haridas, R Albert, M Binder, J Bloem, K LaButti, A Salamov, ...
Studies in mycology 96, 141-153, 2020
322020
Word sense disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering
B Andreopoulos, D Alexopoulou, M Schroeder
International journal of data mining and bioinformatics 2 (3), 193-215, 2008
322008
Gopubmed: Exploring pubmed with ontological background knowledge
H Dietze, D Alexopoulou, MR Alvers, L Barrio-Alvers, B Andreopoulos, ...
Bioinformatics for Systems Biology, 385-399, 2009
312009
Bi-level clustering of mixed categorical and numerical biomedical data
B Andreopoulos, A An, X Wang
International Journal of Data Mining and Bioinformatics 1 (1), 19-56, 2006
292006
Multiple layer clustering of large software systems
B Andreopoulos, A An, V Tzerpos, X Wang
12th Working Conference on Reverse Engineering (WCRE'05), 10 pp.-88, 2005
272005
Phage-specific metabolic reprogramming of virocells
C Howard-Varona, MM Lindback, GE Bastien, N Solonenko, AA Zayed, ...
The ISME journal 14 (4), 881-895, 2020
232020
Integrated analysis reveals hsa-miR-142 as a representative of a lymphocyte-specific gene expression and methylation signature
B Andreopoulos, D Anastassiou
Cancer informatics 11, CIN. S9037, 2012
232012
Satisficing the Conflicting Software Qualities of Maintainability and Performance at the Source Code Level.
B Andreopoulos
WER, 176-188, 2004
122004
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, ...
Nature communications 11 (1), 1-17, 2020
112020
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Articles 1–20