Pouya Kheradpour
TitleCited byYear
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
89262012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317, 2015
25512015
Mapping and analysis of chromatin state dynamics in nine human cell types
J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ...
Nature 473 (7345), 43, 2011
22622011
Histone modifications at human enhancers reflect global cell-type-specific gene expression
ND Heintzman, GC Hon, RD Hawkins, P Kheradpour, A Stark, LF Harp, ...
Nature 459 (7243), 108, 2009
19762009
The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans
GTEx Consortium
Science 348 (6235), 648-660, 2015
19012015
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
Nature 450 (7167), 203, 2007
17782007
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
10892012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
10802011
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476, 2011
8432011
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787-1797, 2010
7552010
Genome analysis of the platypus reveals unique signatures of evolution
WC Warren, LDW Hillier, JAM Graves, E Birney, CP Ponting, F Grützner, ...
Nature 453 (7192), 175, 2008
6452008
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...
Nature 450 (7167), 219, 2007
6182007
A cis-regulatory map of the Drosophila genome
N Nègre, CD Brown, L Ma, CA Bristow, SW Miller, U Wagner, ...
Nature 471 (7339), 527, 2011
4202011
Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS genetics 6 (2), e1000841, 2010
3602010
Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments
P Kheradpour, M Kellis
Nucleic acids research 42 (5), 2976-2987, 2013
2642013
A comprehensive map of insulator elements for the Drosophila genome
N Nègre, CD Brown, PK Shah, P Kheradpour, CA Morrison, JG Henikoff, ...
PLoS genetics 6 (1), e1000814, 2010
2642010
A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands
A Stark, N Bushati, CH Jan, P Kheradpour, E Hodges, J Brennecke, ...
Genes & development 22 (1), 8-13, 2008
2272008
An epigenetic signature for monoallelic olfactory receptor expression
A Magklara, A Yen, BM Colquitt, EJ Clowney, W Allen, ...
Cell 145 (4), 555-570, 2011
2182011
Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
A Stark, P Kheradpour, L Parts, J Brennecke, E Hodges, GJ Hannon, ...
Genome research 17 (12), 1865-1879, 2007
1942007
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
EP Murchison, C Tovar, A Hsu, HS Bender, P Kheradpour, CA Rebbeck, ...
Science 327 (5961), 84-87, 2010
1912010
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