Artem Babaian, Ph.D.
Artem Babaian, Ph.D.
University of British Columbia
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Endogenous retroviral promoter exaptation in human cancer
A Babaian, DL Mager
Mobile DNA 7 (1), 1-21, 2016
Length of dsRNA (poly I: C) drives distinct innate immune responses, depending on the cell type
MF Mian, AN Ahmed, M Rad, A Babaian, D Bowdish, AA Ashkar
Journal of leukocyte biology 94 (5), 1025-1036, 2013
Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma
FE Lock, R Rebollo, K Miceli-Royer, L Gagnier, S Kuah, A Babaian, ...
Proceedings of the National Academy of Sciences 111 (34), E3534-E3543, 2014
Onco-exaptation of an endogenous retroviral LTR drives IRF5 expression in Hodgkin lymphoma
A Babaian, MT Romanish, L Gagnier, LY Kuo, MM Karimi, C Steidl, ...
Oncogene 35 (19), 2542-2546, 2016
LIONS: analysis suite for detecting and quantifying transposable element initiated transcription from RNA-seq
A Babaian, IR Thompson, J Lever, L Gagnier, MM Karimi, DL Mager
Bioinformatics 35 (19), 3839-3841, 2019
A novel isoform of IL-33 revealed by screening for transposable element promoted genes in human colorectal cancer
FE Lock, A Babaian, Y Zhang, L Gagnier, S Kuah, A Weberling, ...
PloS one 12 (7), e0180659, 2017
Visualized computational predictions of transcriptional effects by intronic endogenous retroviruses
Y Zhang, A Babaian, L Gagnier, DL Mager
PloS one 8 (8), e71971, 2013
hackseq: Catalyzing collaboration between biological and computational scientists via hackathon
hackseq Organizing Committee
F1000Research 6, 2017
Integrin-Linked Kinase Mediates Therapeutic Resistance of Quiescent CML Stem Cells to Tyrosine Kinase Inhibitors
K Rothe, A Babaian, N Nakamichi, M Chen, SC Chafe, A Watanabe, ...
Cell Stem Cell, 2020
Synthetic modeling reveals HOXB genes are critical for the initiation and maintenance of human leukemia
M Kusakabe, AC Sun, K Tyshchenko, R Wong, A Nanda, C Shanna, ...
Nature communications 10 (1), 1-15, 2019
Intra-and Inter-individual genetic variation in human ribosomal RNAs
A Babaian
BioRxiv, 118760, 2017
Loss of m1acp3Ψ ribosomal RNA modification is a major feature of cancer
A Babaian, K Rothe, D Girodat, I Minia, S Djondovic, M Milek, SES Miko, ...
Cell Reports 31 (5), 107611, 2020
The miR-185/PAK6 Axis Predicts Therapy Response and Regulates Survival of Drug-Resistant Leukemic Stem Cells in CML
H Lin, K Rothe, M Chen, A Wu, A Babaian, R Yen, J Zeng, J Ruschmann, ...
Blood, 2020
The Focal Adhesion Complex Ilk-Pinch-Parvin Is Key to Niche Interactions and Survival of Quiescent Stem Cells in Chronic Myeloid Leukemia In Vitro and In Vivo
K Rothe, A Babaian, N Nakamichi, M Chen, A Watanabe, D Mager, ...
Blood, The Journal of the American Society of Hematology 128 (22), 936-936, 2016
Endogenous retroviral long terminal repeats as host gene promoters in normal and cancer cells
A Babaian, DL Mager
Retrovirology 11 (S1), P132, 2014
Petabase-scale sequence alignment catalyses viral discovery
RC Edgar, J Taylor, T Altman, P Barbera, D Meleshko, V Lin, D Lohr, ...
bioRxiv, 2020
Inhibition of the MiR-185-PAK6-Mediated Survival and Metabolic Pathways Selectively Targets Drug-Resistant CML Stem/Progenitor Cells
A Wu, K Rothe, M Chen, H Lin, A Babaian, R Yen, DL Forrest, X Jiang
Blood, The Journal of the American Society of Hematology 134 (Supplement_1á…, 2019
bioSyntax: syntax highlighting for computational biology
A Babaian, A Ebou, A Fegen, HY Kam, GE Novakovsky, J Wong, D A´ssi, ...
BMC bioinformatics 19 (1), 303, 2018
Synthetic De Novo Modeling of Human T-Cell Acute Lymphoblastic Leukemia Reveals HOXB Genes Drive Expansion of Leukemia Cells-of-Origin and Established Tumor Clones
M Kusakabe, AC Sun, K Tyshchenko, R Wong, A Nanda, C Shanna, ...
Blood 132 (Supplement 1), 1322-1322, 2018
Targeting ILK impairs TKI-resistance of quiescent leukemic stem cells in vitro and in vivo
K Rothe, A Babaian, N Nakamichi, M Chen, D Forrest, S Dedhar, C Eaves, ...
Experimental Hematology 53, S69, 2017
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