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Artem Babaian, Ph.D.
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Year
Petabase-scale sequence alignment catalyses viral discovery
RC Edgar, J Taylor, V Lin, T Altman, P Barbera, D Meleshko, D Lohr, ...
Nature 602 (7895), 142-147, 2022
2322022
Endogenous retroviral promoter exaptation in human cancer
A Babaian, DL Mager
Mobile DNA 7 (1), 1-21, 2016
1902016
Onco-exaptation of an endogenous retroviral LTR drives IRF5 expression in Hodgkin lymphoma
A Babaian, MT Romanish, L Gagnier, LY Kuo, MM Karimi, C Steidl, ...
Oncogene 35 (19), 2542-2546, 2016
892016
Length of dsRNA (poly I: C) drives distinct innate immune responses, depending on the cell type
MF Mian, AN Ahmed, M Rad, A Babaian, D Bowdish, AA Ashkar
Journal of leukocyte biology 94 (5), 1025-1036, 2013
882013
Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma
FE Lock, R Rebollo, K Miceli-Royer, L Gagnier, S Kuah, A Babaian, ...
Proceedings of the National Academy of Sciences 111 (34), E3534-E3543, 2014
732014
Loss of m1acp3Ψ ribosomal RNA modification is a major feature of cancer
A Babaian, K Rothe, D Girodat, I Minia, S Djondovic, M Milek, SES Miko, ...
Cell reports 31 (5), 2020
622020
The absence or overexpression of IL-15 drastically alters breast cancer metastasis via effects on NK cells, CD4 T cells, and macrophages
A Gillgrass, N Gill, A Babaian, AA Ashkar
The Journal of Immunology 193 (12), 6184-6191, 2014
462014
Integrin-linked kinase mediates therapeutic resistance of quiescent CML stem cells to tyrosine kinase inhibitors
K Rothe, A Babaian, N Nakamichi, M Chen, SC Chafe, A Watanabe, ...
Cell Stem Cell 27 (1), 110-124. e9, 2020
372020
The miR-185/PAK6 axis predicts therapy response and regulates survival of drug-resistant leukemic stem cells in CML
H Lin, K Rothe, M Chen, A Wu, A Babaian, R Yen, J Zeng, J Ruschmann, ...
Blood, The Journal of the American Society of Hematology 136 (5), 596-609, 2020
342020
LIONS: analysis suite for detecting and quantifying transposable element initiated transcription from RNA-seq
A Babaian, IR Thompson, J Lever, L Gagnier, MM Karimi, DL Mager
Bioinformatics 35 (19), 3839-3841, 2019
312019
Ribovirus classification by a polymerase barcode sequence
A Babaian, R Edgar
PeerJ 10, e14055, 2022
282022
A novel isoform of IL-33 revealed by screening for transposable element promoted genes in human colorectal cancer
FE Lock, A Babaian, Y Zhang, L Gagnier, S Kuah, A Weberling, ...
PLoS One 12 (7), e0180659, 2017
252017
Hybrids of RNA viruses and viroid-like elements replicate in fungi
M Forgia, B Navarro, S Daghino, A Cervera, A Gisel, S Perotto, ...
Nature Communications 14 (1), 2591, 2023
14*2023
hackseq: Catalyzing collaboration between biological and computational scientists via hackathon
hackseq Organizing Committee
F1000Research 6, 2017
132017
Synthetic modeling reveals HOXB genes are critical for the initiation and maintenance of human leukemia
M Kusakabe, AC Sun, K Tyshchenko, R Wong, A Nanda, C Shanna, ...
Nature communications 10 (1), 2913, 2019
122019
Visualized computational predictions of transcriptional effects by intronic endogenous retroviruses
Y Zhang, A Babaian, L Gagnier, DL Mager
PLoS One 8 (8), e71971, 2013
72013
Intra-and Inter-individual genetic variation in human ribosomal RNAs
A Babaian
BioRxiv, 118760, 2017
62017
bioSyntax: syntax highlighting for computational biology
A Babaian, A Ebou, A Fegen, HY Kam, GE Novakovsky, J Wong, D A´ssi, ...
BMC bioinformatics 19, 1-6, 2018
32018
Petascale Homology Search for Structure Prediction
S Lee, G Kim, EL Karin, M Mirdita, S Park, R Chikhi, A Babaian, ...
bioRxiv, 2023
22023
The Focal Adhesion Complex Ilk-Pinch-Parvin Is Key to Niche Interactions and Survival of Quiescent Stem Cells in Chronic Myeloid Leukemia In Vitro and In Vivo
K Rothe, A Babaian, N Nakamichi, M Chen, A Watanabe, D Mager, ...
Blood, The Journal of the American Society of Hematology 128 (22), 936-936, 2016
22016
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Articles 1–20