Artem Babaian, Ph.D.
Artem Babaian, Ph.D.
University of British Columbia
Verified email at bccrc.ca - Homepage
Title
Cited by
Cited by
Year
Endogenous retroviral promoter exaptation in human cancer
A Babaian, DL Mager
Mobile DNA 7 (1), 1-21, 2016
962016
Length of dsRNA (poly I: C) drives distinct innate immune responses, depending on the cell type
MF Mian, AN Ahmed, M Rad, A Babaian, D Bowdish, AA Ashkar
Journal of leukocyte biology 94 (5), 1025-1036, 2013
622013
Onco-exaptation of an endogenous retroviral LTR drives IRF5 expression in Hodgkin lymphoma
A Babaian, MT Romanish, L Gagnier, LY Kuo, MM Karimi, C Steidl, ...
Oncogene 35 (19), 2542-2546, 2016
462016
Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma
FE Lock, R Rebollo, K Miceli-Royer, L Gagnier, S Kuah, A Babaian, ...
Proceedings of the National Academy of Sciences 111 (34), E3534-E3543, 2014
462014
Loss of m1acp3Ψ ribosomal RNA modification is a major feature of cancer
A Babaian, K Rothe, D Girodat, I Minia, S Djondovic, M Milek, SES Miko, ...
Cell reports 31 (5), 107611, 2020
162020
A novel isoform of IL-33 revealed by screening for transposable element promoted genes in human colorectal cancer
FE Lock, A Babaian, Y Zhang, L Gagnier, S Kuah, A Weberling, ...
PLoS One 12 (7), e0180659, 2017
132017
LIONS: analysis suite for detecting and quantifying transposable element initiated transcription from RNA-seq
A Babaian, IR Thompson, J Lever, L Gagnier, MM Karimi, DL Mager
Bioinformatics 35 (19), 3839-3841, 2019
122019
Integrin-linked kinase mediates therapeutic resistance of quiescent CML stem cells to tyrosine kinase inhibitors
K Rothe, A Babaian, N Nakamichi, M Chen, SC Chafe, A Watanabe, ...
Cell stem cell 27 (1), 110-124. e9, 2020
112020
Petabase-scale sequence alignment catalyses viral discovery
RC Edgar, J Taylor, V Lin, T Altman, P Barbera, D Meleshko, D Lohr, ...
bioRxiv, 2020.08. 07.241729, 2021
102021
The miR-185/PAK6 axis predicts therapy response and regulates survival of drug-resistant leukemic stem cells in CML
H Lin, K Rothe, M Chen, A Wu, A Babaian, R Yen, J Zeng, J Ruschmann, ...
Blood 136 (5), 596-609, 2020
72020
Visualized computational predictions of transcriptional effects by intronic endogenous retroviruses
Y Zhang, A Babaian, L Gagnier, DL Mager
PloS one 8 (8), e71971, 2013
72013
hackseq: Catalyzing collaboration between biological and computational scientists via hackathon
hackseq Organizing Committee
F1000Research 6, 2017
62017
Synthetic modeling reveals HOXB genes are critical for the initiation and maintenance of human leukemia
M Kusakabe, AC Sun, K Tyshchenko, R Wong, A Nanda, C Shanna, ...
Nature communications 10 (1), 1-15, 2019
32019
Intra-and Inter-individual genetic variation in human ribosomal RNAs
A Babaian
BioRxiv, 118760, 2017
32017
Ribovirus classification by a polymerase barcode sequence
A Babaian, RC Edgar
bioRxiv, 2021
22021
bioSyntax: syntax highlighting for computational biology
A Babaian, A Ebou, A Fegen, HY Kam, GE Novakovsky, J Wong, D Assi, ...
BMC bioinformatics 19 (1), 1-6, 2018
22018
The focal adhesion complex Ilk-pinch-parvin is key to niche interactions and survival of quiescent stem cells in chronic myeloid leukemia in vitro and in vivo
K Rothe, A Babaian, N Nakamichi, M Chen, A Watanabe, D Mager, ...
Blood 128 (22), 936, 2016
22016
Endogenous retroviral long terminal repeats as host gene promoters in normal and cancer cells
A Babaian, DL Mager
Retrovirology 11 (1), 1-1, 2014
12014
Inhibition of the MiR-185-PAK6-Mediated Survival and Metabolic Pathways Selectively Targets Drug-Resistant CML Stem/Progenitor Cells
A Wu, K Rothe, M Chen, H Lin, A Babaian, R Yen, DL Forrest, X Jiang
Blood, The Journal of the American Society of Hematology 134 (Supplement_1…, 2019
2019
Synthetic De Novo Modeling of Human T-Cell Acute Lymphoblastic Leukemia Reveals HOXB Genes Drive Expansion of Leukemia Cells-of-Origin and Established Tumor Clones
M Kusakabe, AC Sun, K Tyshchenko, R Wong, A Nanda, C Shanna, ...
Blood 132, 1322, 2018
2018
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