| Enabling semantic queries across federated bioinformatics databases AC Sima, T Mendes de Farias, E Zbinden, M Anisimova, M Gil, ... Database 2019, 2019 | 47 | 2019 |
| Semantic integration and enrichment of heterogeneous biological databases AC Sima, K Stockinger, TM de Farias, M Gil Evolutionary genomics: Statistical and computational methods, 655-690, 2019 | 19 | 2019 |
| Big Data architecture for intelligent maintenance: a focus on query processing and machine learning algorithms C Lehmann, LG Huber, T Horisberger, G Scheiba, AC Sima, K Stockinger Journal of Big Data 7 (1), 1-26, 2020 | 12 | 2020 |
| Bio-SODA: Enabling natural language question answering over knowledge graphs without training data AC Sima, T Mendes de Farias, M Anisimova, C Dessimoz, ... 33rd International Conference on Scientific and Statistical Database …, 2021 | 10 | 2021 |
| Cyclone: Unified stream and batch processing M Harvan, T Locher, AC Sima 2016 45th International Conference on Parallel Processing Workshops (ICPPW …, 2016 | 10 | 2016 |
| A hybrid approach for alarm verification using stream processing, machine learning and text analytics AC Sima, K Stockinger, K Affolter, M Braschler, P Monte, L Kaiser EDBT 2018, Vienna, Austria, 26-29 March 2018, 2018 | 9 | 2018 |
| On the Potential of Artificial Intelligence Chatbots for Data Exploration of Federated Bioinformatics Knowledge Graphs AC Sima, TM de Farias arXiv preprint arXiv:2304.10427, 2023 | 6 | 2023 |
| A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL AC Sima, C Dessimoz, K Stockinger, M Zahn-Zabal, TM de Farias F1000Research 8, 2019 | 6 | 2019 |
| Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation AC Sima, T Mendes de Farias, M Anisimova, C Dessimoz, ... Distributed and Parallel Databases, 1-32, 2022 | 5 | 2022 |
| SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph JC Rangel, TM de Farias, AC Sima, N Kobayashi arXiv preprint arXiv:2402.04627, 2024 | 1 | 2024 |
| The SIB Swiss Institute of Bioinformatics Semantic Web of data Nucleic Acids Research, gkad902, 2023 | 1 | 2023 |
| Exploring Disease Model Mouse Using Knowledge Graphs: Combining Gene Expression, Orthology, and Disease Datasets T Kushida, T Mendes de Farias, AC Sima, C Dessimoz, H Chiba, ... bioRxiv, 2023.08. 30.555283, 2023 | 1 | 2023 |
| Optimizing Parallel CFD Simulations of 2D Compressible Flows AC Sima, E Slusanschi 2012 14th International Symposium on Symbolic and Numeric Algorithms for …, 2012 | 1 | 2012 |
| Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets TM de Farias, T Kushida, AC Sima, C Dessimoz, H Chiba, F Bastian, ... | | 2023 |
| Towards predicting essential proteins via federated SPARQL queries P Liakopoulos, B Banfalvi, X Wang, S Majidian, TM de Farias, ... | | 2023 |
| Federating and querying heterogeneous and distributed Web APIs and triple stores T Mendes de Farias, C Dessimoz, A Ayllon Benitez, C Yang, J Long, ... arXiv e-prints, arXiv: 2206.01594, 2022 | | 2022 |
| INODE: Building an End-to-End Data Exploration System in Practice Authors' Copy S Amer-Yahia, G Koutrika, F Bastian, T Belmpas, M Braschler, U Brunner, ... | | 2021 |
| INODE: Building an End-to-End Data Exploration System in Practice [Extended Vision] S Amer-Yahia, G Koutrika, F Bastian, T Belmpas, M Braschler, U Brunner, ... arXiv preprint arXiv:2104.04194, 2021 | | 2021 |
| Enabling Complex Semantic Queries to Bioinformatics Databases Through Intuitive Search Over Data AC Sima, C Dessimoz, K Stockinger, M Robinson-Rechavi, D Kossman, ... éditeur non identifié, 2020 | | 2020 |
