| De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells G Rodrigo, TE Landrain, A Jaramillo Proceedings of the National Academy of Sciences 109 (38), 15271-15276, 2012 | 153 | 2012 |
| DESHARKY: automatic design of metabolic pathways for optimal cell growth G Rodrigo, J Carrera, KJ Prather, A Jaramillo Bioinformatics 24 (21), 2554-2556, 2008 | 108 | 2008 |
| Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions J Carrera, G Rodrigo, A Jaramillo, SF Elena Genome biology 10 (9), 1-15, 2009 | 87 | 2009 |
| Genetdes: automatic design of transcriptional networks G Rodrigo, J Carrera, A Jaramillo Bioinformatics 23 (14), 1857-1858, 2007 | 82 | 2007 |
| A meta-analysis reveals the commonalities and differences in Arabidopsis thaliana response to different viral pathogens G Rodrigo, J Carrera, V Ruiz-Ferrer, FJ del Toro, C Llave, O Voinnet, ... PLoS One 7 (7), e40526, 2012 | 70 | 2012 |
| Changes in the gene expression profile of Arabidopsis thaliana after infection with Tobacco etch virus P Agudelo-Romero, P Carbonell, F De La Iglesia, J Carrera, G Rodrigo, ... Virology journal 5 (1), 1-11, 2008 | 65 | 2008 |
| Towards an integrated molecular model of plant–virus interactions SF Elena, G Rodrigo Current opinion in virology 2 (6), 719-724, 2012 | 58 | 2012 |
| Empirical model and in vivo characterization of the bacterial response to synthetic gene expression show that ribosome allocation limits growth rate J Carrera, G Rodrigo, V Singh, B Kirov, A Jaramillo Biotechnology journal 6 (7), 773-783, 2011 | 57 | 2011 |
| AutoBioCAD: full biodesign automation of genetic circuits G Rodrigo, A Jaramillo ACS synthetic biology 2 (5), 230-236, 2013 | 56 | 2013 |
| Computational design of synthetic regulatory networks from a genetic library to characterize the designability of dynamical behaviors G Rodrigo, J Carrera, A Jaramillo Nucleic acids research 39 (20), e138-e138, 2011 | 47 | 2011 |
| Asmparts: assembly of biological model parts G Rodrigo, J Carrera, A Jaramillo Systems and synthetic biology 1 (4), 167-170, 2007 | 45 | 2007 |
| Interaction network of tobacco etch potyvirus NIa protein with the host proteome during infection F Martínez, G Rodrigo, V Aragonés, M Ruiz, I Lodewijk, U Fernández, ... BMC genomics 17 (1), 1-13, 2016 | 43 | 2016 |
| A systems biology approach to the evolution of plant–virus interactions SF Elena, J Carrera, G Rodrigo Current opinion in plant biology 14 (4), 372-377, 2011 | 40 | 2011 |
| Model-based redesign of global transcription regulation J Carrera, G Rodrigo, A Jaramillo Nucleic acids research 37 (5), e38-e38, 2009 | 37 | 2009 |
| Identification, introgression, and validation of fruit volatile QTLs from a red-fruited wild tomato species JL Rambla, A Medina, A Fernández-del-Carmen, W Barrantes, ... Journal of experimental botany 68 (3), 429-442, 2017 | 33 | 2017 |
| Full design automation of multi-state RNA devices to program gene expression using energy-based optimization G Rodrigo, TE Landrain, E Majer, JA Darňs, A Jaramillo PLoS Comput Biol 9 (8), e1003172, 2013 | 33 | 2013 |
| A new frontier in synthetic biology: automated design of small RNA devices in bacteria G Rodrigo, TE Landrain, S Shen, A Jaramillo Trends in Genetics 29 (9), 529-536, 2013 | 30 | 2013 |
| Optimal viral strategies for bypassing RNA silencing G Rodrigo, J Carrera, A Jaramillo, SF Elena Journal of The Royal Society Interface 8 (55), 257-268, 2011 | 30 | 2011 |
| Dynamic signal processing by ribozyme-mediated RNA circuits to control gene expression S Shen, G Rodrigo, S Prakash, E Majer, TE Landrain, B Kirov, JA Darňs, ... Nucleic acids research 43 (10), 5158-5170, 2015 | 25 | 2015 |
| Structural discrimination of robustness in transcriptional feedforward loops for pattern formation G Rodrigo, SF Elena PLoS One 6 (2), e16904, 2011 | 25 | 2011 |
