| STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ... Nucleic acids research 47 (D1), D607-D613, 2019 | 12876 | 2019 |
| The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ... Nucleic acids research, gkw937, 2016 | 6555 | 2016 |
| UCSF ChimeraX: Structure visualization for researchers, educators, and developers EF Pettersen, TD Goddard, CC Huang, EC Meng, GS Couch, TI Croll, ... Protein Science 30 (1), 70-82, 2021 | 3729 | 2021 |
| UCSF ChimeraX: Meeting modern challenges in visualization and analysis TD Goddard, CC Huang, EC Meng, EF Pettersen, GS Couch, JH Morris, ... Protein Science 27 (1), 14-25, 2018 | 2989 | 2018 |
| Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007 | 2673 | 2007 |
| Genetic meta-analysis of diagnosed Alzheimer’s disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing BW Kunkle, B Grenier-Boley, R Sims, JC Bis, V Damotte, AC Naj, ... Nature genetics 51 (3), 414-430, 2019 | 1946 | 2019 |
| Cytoscape StringApp: network analysis and visualization of proteomics data NT Doncheva, JH Morris, J Gorodkin, LJ Jensen Journal of proteome research 18 (2), 623-632, 2018 | 1278 | 2018 |
| Cytoscape automation: empowering workflow-based network analysis D Otasek, JH Morris, J Bouças, AR Pico, B Demchak Genome biology 20, 1-15, 2019 | 931 | 2019 |
| Biological network exploration with Cytoscape 3 G Su, JH Morris, B Demchak, GD Bader Current protocols in bioinformatics 47 (1), 8.13. 1-8.13. 24, 2014 | 888 | 2014 |
| Global landscape of HIV–human protein complexes S Jaeger, P Cimermancic, N Gulbahce, JR Johnson, KE McGovern, ... Nature 481 (7381), 365-370, 2012 | 762 | 2012 |
| clusterMaker: a multi-algorithm clustering plugin for Cytoscape JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ... BMC bioinformatics 12 (1), 1-14, 2011 | 577 | 2011 |
| Using sequence similarity networks for visualization of relationships across diverse protein superfamilies HJ Atkinson, JH Morris, TE Ferrin, PC Babbitt PloS one 4 (2), e4345, 2009 | 446 | 2009 |
| GLay: community structure analysis of biological networks G Su, A Kuchinsky, JH Morris, DJ States, F Meng Bioinformatics 26 (24), 3135-3137, 2010 | 258 | 2010 |
| Randomized, double-blind, Phase 1 trial of an alphavirus replicon vaccine for cytomegalovirus in CMV seronegative adult volunteers DI Bernstein, EA Reap, K Katen, A Watson, K Smith, P Norberg, ... Vaccine 28 (2), 484-493, 2009 | 243 | 2009 |
| The structure–function linkage database E Akiva, S Brown, DE Almonacid, AE Barber 2nd, AF Custer, MA Hicks, ... Nucleic acids research 42 (D1), D521-D530, 2014 | 236 | 2014 |
| Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions JH Morris, GM Knudsen, E Verschueren, JR Johnson, P Cimermancic, ... Nature protocols 9 (11), 2539-2554, 2014 | 202 | 2014 |
| Leveraging enzyme structure− function relationships for functional inference and experimental design: the structure− function linkage database SCH Pegg, SD Brown, S Ojha, J Seffernick, EC Meng, JH Morris, ... Biochemistry 45 (8), 2545-2555, 2006 | 194 | 2006 |
| Cytokine profile and prognostic significance of high neutrophil-lymphocyte ratio in colorectal cancer ZY Chen, K Raghav, CH Lieu, ZQ Jiang, C Eng, JN Vauthey, GJ Chang, ... British journal of cancer 112 (6), 1088-1097, 2015 | 171 | 2015 |
| From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II H Braberg, H Jin, EA Moehle, YA Chan, S Wang, M Shales, JJ Benschop, ... Cell 154 (4), 775-788, 2013 | 153 | 2013 |
| Enhancing UCSF Chimera through web services CC Huang, EC Meng, JH Morris, EF Pettersen, TE Ferrin Nucleic acids research 42 (W1), W478-W484, 2014 | 151 | 2014 |
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
