Stephen D Larson
Stephen D Larson
OpenWorm Foundation
Verified email at openworm.org - Homepage
Title
Cited by
Cited by
Year
Sensory maps in the olfactory cortex defined by long-range viral tracing of single neurons
S Ghosh, SD Larson, H Hefzi, Z Marnoy, T Cutforth, K Dokka, KK Baldwin
Nature 472 (7342), 217-220, 2011
2112011
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience
WJ Bug, GA Ascoli, JS Grethe, A Gupta, C Fennema-Notestine, AR Laird, ...
Neuroinformatics 6 (3), 175-194, 2008
1502008
The cell-centered database
ME Martone, S Zhang, A Gupta, X Qian, H He, DL Price, M Wong, ...
Neuroinformatics 1 (4), 379-395, 2003
1132003
OpenWorm: an open-science approach to modeling Caenorhabditis elegans
B Szigeti, P Gleeson, M Vella, S Khayrulin, A Palyanov, J Hokanson, ...
Frontiers in computational neuroscience 8, 137, 2014
1122014
The cell centered database project: an update on building community resources for managing and sharing 3D imaging data
ME Martone, J Tran, WW Wong, J Sargis, L Fong, S Larson, SP Lamont, ...
Journal of structural biology 161 (3), 220-231, 2008
972008
Digital atlasing and standardization in the mouse brain
M Hawrylycz, RA Baldock, A Burger, T Hashikawa, GA Johnson, ...
PLoS Comput Biol 7 (2), e1001065, 2011
962011
NeuroLex. org: an online framework for neuroscience knowledge
SD Larson, M Martone
Frontiers in neuroinformatics 7, 18, 2013
592013
Ontologies for neuroscience: what are they and what are they good for?
SD Larson, ME Martone
Frontiers in neuroscience 3, 7, 2009
532009
Development and use of ontologies inside the neuroscience information framework: a practical approach
FT Imam, S Larson, JS Grethe, A Gupta, A Bandrowski, ME Martone
Frontiers in genetics 3, 111, 2012
502012
Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment
A Palyanov, S Khayrulin, SD Larson, A Dibert
In silico biology 11 (3, 4), 137-147, 2012
432012
Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue
A Palyanov, S Khayrulin, SD Larson
Advances in Engineering Software 98, 1-11, 2016
322016
A formal ontology of subcellular neuroanatomy
SD Larson, LL Fong, A Gupta, C Condit, WJ Bug, ME Martone
Frontiers in neuroinformatics 1, 3, 2007
322007
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans
GP Sarma, CW Lee, T Portegys, V Ghayoomie, T Jacobs, B Alicea, ...
Philosophical Transactions of the Royal Society B 373 (1758), 20170382, 2018
242018
Open source brain: a collaborative resource for visualizing, analyzing, simulating, and developing standardized models of neurons and circuits
P Gleeson, M Cantarelli, B Marin, A Quintana, M Earnshaw, S Sadeh, ...
Neuron 103 (3), 395-411. e5, 2019
182019
A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework
J Cachat, A Bandrowski, JS Grethe, A Gupta, V Astakhov, F Imam, ...
International review of neurobiology 103, 39-68, 2012
182012
c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans
P Gleeson, D Lung, R Grosu, R Hasani, SD Larson
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
172018
Three-dimensional simulation of the Caenorhabditis elegans body and muscle cells in liquid and gel environments for behavioural analysis
A Palyanov, S Khayrulin, SD Larson
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
172018
Unit testing, model validation, and biological simulation
GP Sarma, TW Jacobs, MD Watts, SV Ghayoomie, SD Larson, RC Gerkin
F1000Research 5, 2016
162016
An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy.
L Fong, SD Larson, A Gupta, C Condit, WJ Bug, L Chen, R West, ...
OWLED, 2007
122007
SciCrunch: A cooperative and collaborative data and resource discovery platform for scientific communities
JS Grethe, A Bandrowski, DE Banks, C Condit, A Gupta, S Larson, Y Li, ...
Front. Neuroinform. Conference Abstract: Neuroinformatics, 2014
102014
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Articles 1–20