| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1145 | 2018 |
| Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa AR Reimer, G Van Domselaar, S Stroika, M Walker, H Kent, C Tarr, ... Emerging infectious diseases 17 (11), 2113, 2011 | 203 | 2011 |
| SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology A Petkau, P Mabon, C Sieffert, NC Knox, J Cabral, M Iskander, M Iskander, ... Microbial genomics 3 (6), e000116, 2017 | 157 | 2017 |
| Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in Salmonella enterica in Canada Using Staramr A Bharat, A Petkau, BP Avery, JC Chen, JP Folster, CA Carson, ... Microorganisms 10 (2), 292, 2022 | 101 | 2022 |
| Bacillus cereus Biovar Anthracis Causing Anthrax in Sub-Saharan Africa—Chromosomal Monophyly and Broad Geographic Distribution KS Antonation, K Grützmacher, S Dupke, P Mabon, F Zimmermann, ... PLoS neglected tropical diseases 10 (9), e0004923, 2016 | 100 | 2016 |
| Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis AD Tyler, S Christianson, NC Knox, P Mabon, J Wolfe, G Van Domselaar, ... PLoS One 11 (2), e0148676, 2016 | 76 | 2016 |
| Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation AB Olson, H Kent, CD Sibley, ME Grinwis, P Mabon, C Ouellette, S Tyson, ... BMC genomics 14, 1-23, 2013 | 67 | 2013 |
| Whole-genome sequence of livestock-associated ST398 methicillin-resistant Staphylococcus aureus isolated from humans in Canada GR Golding, L Bryden, PN Levett, RR McDonald, A Wong, MR Graham, ... Journal of bacteriology 194 (23), 6627-6628, 2012 | 57 | 2012 |
| A Study of the Infant Nasal Microbiome Development over the First Year of Life and in Relation to Their Primary Adult Caregivers Using cpn60 Universal Target (UT … SW Peterson, NC Knox, GR Golding, SD Tyler, AD Tyler, P Mabon, ... PLoS One 11 (3), e0152493, 2016 | 51 | 2016 |
| The integrated rapid infectious disease analysis (IRIDA) platform TC Matthews, FR Bristow, EJ Griffiths, A Petkau, J Adam, D Dooley, ... BioRxiv, 381830, 2018 | 44 | 2018 |
| Two novel toxin variants revealed by whole-genome sequencing of 175 Clostridium botulinum type E strains KA Weedmark, DL Lambert, P Mabon, KL Hayden, CJ Urfano, D Leclair, ... Applied and Environmental Microbiology 80 (20), 6334-6345, 2014 | 32 | 2014 |
| SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology. Microb Genom 3: e000116 A Petkau, P Mabon, C Sieffert, NC Knox, J Cabral, M Iskander, M Iskander, ... | 31 | 2017 |
| Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations E Marinier, R Zaheer, C Berry, KA Weedmark, M Domaratzki, P Mabon, ... Nucleic acids research 45 (18), e159-e159, 2017 | 25 | 2017 |
| Clostridium botulinum group II isolate phylogenomic profiling using whole-genome sequence data KA Weedmark, P Mabon, KL Hayden, D Lambert, G Van Domselaar, ... Applied and environmental microbiology 81 (17), 5938-5948, 2015 | 24 | 2015 |
| Sylvatic Plague in a Canadian Black-Tailed Prairie Dog (Cynomys ludovicianus) KS Antonation, TK Shury, TK Bollinger, A Olson, P Mabon, ... Journal of Wildlife Diseases 50 (3), 699-702, 2014 | 19 | 2014 |
| DNA sequence heterogeneity of Campylobacter jejuni CJIE4 prophages and expression of prophage genes CG Clark, PM Chong, SJ McCorrister, P Mabon, M Walker, ... PLoS One 9 (4), e95349, 2014 | 19 | 2014 |
| Shared genome analyses of notable listeriosis outbreaks, highlighting the critical importance of epidemiological evidence, input datasets and interpretation criteria A Reimer, K Weedmark, A Petkau, CL Peterson, M Walker, N Knox, ... Microbial Genomics 5 (1), e000237, 2019 | 18 | 2019 |
| Rapid and accurate SNP genotyping of clonal bacterial pathogens with BioHansel G Labbé, P Kruczkiewicz, J Robertson, P Mabon, J Schonfeld, D Kein, ... Microbial genomics 7 (9), 000651, 2021 | 16 | 2021 |
| Tatumella saanichensis sp. nov., isolated from a cystic fibrosis patient DM Tracz, MW Gilmour, P Mabon, DR Beniac, L Hoang, P Kibsey, ... International Journal of Systematic and Evolutionary Microbiology 65 (Pt_6 …, 2015 | 13 | 2015 |
| Correlation between phenotypic and in silico detection of antimicrobial resistance in Salmonella enterica in Canada using staramr. Microorganisms. 2022; 10: 292 A Bharat, A Petkau, BP Avery, JC Chen, JP Folster, CA Carson, ... | 10 | |
