| Drug repositioning based on the heterogeneous information fusion graph convolutional network L Cai, C Lu, J Xu, Y Meng, P Wang, X Fu, X Zeng, Y Su Briefings in bioinformatics 22 (6), bbab319, 2021 | 99 | 2021 |
| A weighted bilinear neural collaborative filtering approach for drug repositioning Y Meng, C Lu, M Jin, J Xu, X Zeng, J Yang Briefings in bioinformatics 23 (2), bbab581, 2022 | 81 | 2022 |
| Indicator regularized non-negative matrix factorization method-based drug repurposing for COVID-19 X Tang, L Cai, Y Meng, JL Xu, C Lu, J Yang Frontiers in Immunology 11, 603615, 2021 | 54 | 2021 |
| Drug repositioning based on similarity constrained probabilistic matrix factorization: COVID-19 as a case study Y Meng, M Jin, X Tang, J Xu Applied soft computing 103, 107135, 2021 | 48 | 2021 |
| Graph embedding and Gaussian mixture variational autoencoder network for end-to-end analysis of single-cell RNA sequencing data J Xu, J Xu, Y Meng, C Lu, L Cai, X Zeng, R Nussinov, F Cheng Cell Reports Methods 3 (1), 2023 | 36 | 2023 |
| Probing lncRNA–protein interactions: data repositories, models, and algorithms L Peng, F Liu, J Yang, X Liu, Y Meng, X Deng, C Peng, G Tian, L Zhou Frontiers in genetics 10, 1346, 2020 | 29 | 2020 |
| Identifying potential miRNAs–disease associations with probability matrix factorization J Xu, L Cai, B Liao, W Zhu, P Wang, Y Meng, J Lang, G Tian, J Yang Frontiers in genetics 10, 1234, 2019 | 28 | 2019 |
| LRMCMDA: predicting miRNA-disease association by integrating low-rank matrix completion with miRNA and disease similarity information J Xu, W Zhu, L Cai, B Liao, Y Meng, J Xiang, D Yuan, G Tian, J Yang IEEE Access 8, 80728-80738, 2020 | 22 | 2020 |
| Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data J Xu, L Cui, J Zhuang, Y Meng, P Bing, B He, G Tian, CK Pui, T Wu, ... Computers in Biology and Medicine 146, 105697, 2022 | 13 | 2022 |
| Computational drug repositioning using similarity constrained weight regularization matrix factorization: A case of COVID‐19 J Xu, Y Meng, L Peng, L Cai, X Tang, Y Liang, G Tian, J Yang Journal of Cellular and Molecular Medicine 26 (13), 3772-3782, 2022 | 12 | 2022 |
| A novel hybrid feature selection and ensemble learning framework for unbalanced cancer data diagnosis with transcriptome and functional proteomic X Tang, L Cai, Y Meng, C Gu, J Yang, J Yang IEEE Access 9, 51659-51668, 2021 | 12 | 2021 |
| Degree-based similarity indexes for identifying potential miRNA-disease associations Y Meng, M Jin, X Tang, J Xu IEEE Access 8, 133170-133179, 2020 | 7 | 2020 |
| Drug repositioning based on weighted local information augmented graph neural network Y Meng, Y Wang, J Xu, C Lu, X Tang, T Peng, B Zhang, G Tian, J Yang Briefings in Bioinformatics 25 (1), bbad431, 2024 | 5 | 2024 |
| HFS-SLPEE: A novel hierarchical feature selection and second learning probability error ensemble model for precision cancer diagnosis Y Meng, M Jin Frontiers in Cell and Developmental Biology 9, 696359, 2021 | 4 | 2021 |
| Machine learning for drug repositioning: Recent advances and challenges L Cai, J Chu, J Xu, Y Meng, C Lu, X Tang, G Wang, G Tian, J Yang Current Research in Chemical Biology, 100042, 2023 | 3 | 2023 |
| Graph neural network and multi-data heterogeneous networks for microbe-disease prediction H Gong, X You, M Jin, Y Meng, H Zhang, S Yang, J Xu Frontiers in Microbiology 13, 1077111, 2022 | 2 | 2022 |
| Enhancing drug repositioning through local interactive learning with bilinear attention networks X Tang, C Zhou, C Lu, Y Meng, J Xu, X Hu, G Tian, J Yang IEEE Journal of Biomedical and Health Informatics, 2023 | 1 | 2023 |
| Medical Image Segmentation Using Dual Branch Networks with Embedded Attention Mechanism S Yang, M Jin, L Wang, C Lu, Y Meng, D Yan, Z Huang, J Xu 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2023 | | 2023 |
| Graph Convolutional Neural Network for Predicting the Associations among Human Microbes and Diseases via Multi-layer Attention H Zhang, M Jin, H Gong, P Wang, Y Meng, J Xu, G Tian, J Yang | | 2023 |
| Drug Repositioning Based on Similarity-Guided Multi-View Self-Attention LJ Cai, XD Shang, J Xu, YJ Meng, C Lu, XF Tang Available at SSRN 4486705, 0 | | |
