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Beifang Niu
Beifang Niu
Research professor at Computer Network Information Center of Chinese Academy of Sciences (CNIC)
Verified email at cnic.cn
Title
Cited by
Cited by
Year
CD-HIT: accelerated for clustering the next-generation sequencing data
L Fu, B Niu, Z Zhu, S Wu, W Li
Bioinformatics 28 (23), 3150-3152, 2012
74282012
Comprehensive molecular characterization of gastric adenocarcinoma
AJ Bass, V Thorsson, I Shmulevich, SM Reynolds, M Miller, B Bernard, ...
Nature 513 (7517), 202, 2014
50842014
Mutational landscape and significance across 12 major cancer types
C Kandoth, MD McLellan, F Vandin, K Ye, B Niu, C Lu, M Xie, Q Zhang, ...
Nature 502 (7471), 333-339, 2013
46592013
CD-HIT Suite: a web server for clustering and comparing biological sequences
Y Huang, B Niu, Y Gao, L Fu, W Li
Bioinformatics 26 (5), 680-682, 2010
24732010
The repertoire of mutational signatures in human cancer
LB Alexandrov, J Kim, NJ Haradhvala, MN Huang, AWT Ng, Y Wu, A Boot, ...
Nature 578 (7793), 94-101, 2020
23772020
Pan-cancer analysis of whole genomes
TITPCAWG Consortium
Nature 578 (7793), 82-93, 2020
1688*2020
Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin
KA Hoadley, C Yau, DM Wolf, AD Cherniack, D Tamborero, S Ng, ...
Cell 158 (4), 929-944, 2014
15232014
Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes
MDM Leiserson, F Vandin, HT Wu, JR Dobson, JV Eldridge, JL Thomas, ...
Nature genetics 47 (2), 106-114, 2015
9152015
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
8462020
Patterns of somatic structural variation in human cancer genomes
Y Li, ND Roberts, JA Wala, O Shapira, SE Schumacher, K Kumar, ...
Nature 578 (7793), 112-121, 2020
6892020
MSIsensor: microsatellite instability detection using paired tumor-normal sequence data
B Niu, K Ye, Q Zhang, C Lu, M Xie, MD McLellan, MC Wendl, L Ding
Bioinformatics 30 (7), 1015-1016, 2014
6622014
WebMGA: a customizable web server for fast metagenomic sequence analysis
S Wu, Z Zhu, L Fu, B Niu, W Li
BMC genomics 12 (1), 1-9, 2011
6482011
Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ...
Nature Genetics, 1-11, 2020
5372020
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ...
Nature 578 (7793), 102-111, 2020
4992020
Ultrafast clustering algorithms for metagenomic sequence analysis
W Li, L Fu, B Niu, S Wu, J Wooley
Briefings in bioinformatics 13 (6), 656-668, 2012
4792012
Clonal diversity of recurrently mutated genes in myelodysplastic syndromes
MJ Walter, D Shen, J Shao, L Ding, BS White, C Kandoth, CA Miller, B Niu, ...
Leukemia 27 (6), 1275-1282, 2013
3272013
The landscape of viral associations in human cancers
M Zapatka, I Borozan, DS Brewer, M Iskar, A Grundhoff, M Alawi, N Desai, ...
Nature genetics 52 (3), 320-330, 2020
3242020
Artificial and natural duplicates in pyrosequencing reads of metagenomic data
B Niu, L Fu, S Sun, W Li
BMC bioinformatics 11 (1), 1-11, 2010
3192010
Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition
B Rodriguez-Martin, EG Alvarez, A Baez-Ortega, J Zamora, F Supek, ...
Nature Genetics, 1-14, 2020
3152020
Patterns and functional implications of rare germline variants across 12 cancer types
C Lu, M Xie, MC Wendl, J Wang, MD McLellan, MDM Leiserson, K Huang, ...
Nature communications 6 (1), 1-13, 2015
2982015
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