Parameswaran Ramachandran
Parameswaran Ramachandran
Princess Margaret Cancer Centre, University Health Network
Verified email at uhnresearch.ca
Title
Cited by
Cited by
Year
Identification of hot-spot locations in proteins using digital filters
P Ramachandran, A Antoniou
IEEE Journal of Selected Topics in Signal Processing 2 (3), 378-389, 2008
372008
Identification and location of hot spots in proteins using the short-time discrete Fourier transform
P Ramachandran, A Antoniou, PP Vaidyanathan
Conference Record of the Thirty-Eighth Asilomar Conference on Signals …, 2004
372004
MaSC: mappability-sensitive cross-correlation for estimating mean fragment length of single-end short-read sequencing data
P Ramachandran, GA Palidwor, CJ Porter, TJ Perkins
Bioinformatics 29 (4), 444-450, 2013
332013
AhR controls redox homeostasis and shapes the tumor microenvironment in BRCA1-associated breast cancer
SP Kubli, C Bassi, C Roux, A Wakeham, C Göbl, W Zhou, SM Jafari, ...
Proceedings of the National Academy of Sciences 116 (9), 3604-3613, 2019
322019
E3 ubiquitin ligase Mule targets β-catenin under conditions of hyperactive Wnt signaling
C Dominguez-Brauer, R Khatun, AJ Elia, KL Thu, P Ramachandran, ...
Proceedings of the National Academy of Sciences 114 (7), E1148-E1157, 2017
312017
Filter-based methodology for the location of hot spots in proteins and exons in DNA
P Ramachandran, WS Lu, A Antoniou
IEEE Transactions on Biomedical Engineering 59 (6), 1598-1609, 2012
302012
Identification of tubulin drug binding sites and prediction of relative differences in binding affinities to tubulin isotypes using digital signal processing
K Chen, JT Huzil, H Freedman, P Ramachandran, A Antoniou, ...
Journal of Molecular Graphics and Modelling 27 (4), 497-505, 2008
232008
Mutant ACVR1 arrests glial cell differentiation to drive tumorigenesis in pediatric gliomas
J Fortin, R Tian, I Zarrabi, G Hill, E Williams, G Sanchez-Duffhues, ...
Cancer cell 37 (3), 308-323. e12, 2020
212020
Location of exons in DNA sequences using digital filters
P Ramachandran, WS Lu, A Antoniou
2009 IEEE International Symposium on Circuits and Systems, 2337-2340, 2009
182009
BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates
P Ramachandran, GA Palidwor, TJ Perkins
Epigenetics & chromatin 8 (1), 1-16, 2015
172015
Localization of hot spots in proteins using digital filters
P Ramachandran, A Antoniou
2006 IEEE International Symposium on Signal Processing and Information …, 2006
142006
Chromatin tandem affinity purification sequencing
VD Soleimani, GA Palidwor, P Ramachandran, TJ Perkins, MA Rudnicki
Nature protocols 8 (8), 1525-1534, 2013
122013
Improved hot-spot location technique for proteins using a bandpass notch digital filter
P Ramachandran, WS Lu, A Antoniou
2008 IEEE International Symposium on Circuits and Systems, 2673-2676, 2008
122008
Bayesian correlation analysis for sequence count data
D Sánchez-Taltavull, P Ramachandran, N Lau, TJ Perkins
PloS one 11 (10), e0163595, 2016
112016
Adaptive bandwidth kernel density estimation for next-generation sequencing data
P Ramachandran, TJ Perkins
BMC proceedings 7 (7), 1-10, 2013
82013
Optimized numerical mapping scheme for filter-based exon location in DNA using a quasi-Newton algorithm
P Ramachandran, WS Lu, A Antoniou
Proceedings of 2010 IEEE International Symposium on Circuits and Systems …, 2010
82010
Cis-regulatory determinants of MyoD function
VD Soleimani, D Nguyen, P Ramachandran, GA Palidwor, CJ Porter, ...
Nucleic acids research 46 (14), 7221-7235, 2018
42018
Uncovering robust patterns of microRNA co-expression across cancers using Bayesian Relevance Networks
P Ramachandran, D Sánchez-Taltavull, TJ Perkins
PloS one 12 (8), e0183103, 2017
42017
Identification and location of hot spots in proteins using digital filters
P Ramachandran, A Antoniou
IEEE Journal of selected topics in signal processing 2 (3), 2008
42008
Fcmr regulates mononuclear phagocyte control of anti-tumor immunity
SP Kubli, L Vornholz, G Duncan, W Zhou, P Ramachandran, J Fortin, ...
Nature communications 10 (1), 1-15, 2019
32019
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