Mehran Karimzadeh
Mehran Karimzadeh
Vector Institute and UCSF
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Cited by
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Variation in genomic landscape of clear cell renal cell carcinoma across Europe
G Scelo, Y Riazalhosseini, L Greger, L Letourneau, M GonzÓlez-Porta, ...
Nature communications 5 (1), 1-13, 2014
Umap and Bismap: quantifying genome and methylome mappability
M Karimzadeh, C Ernst, A Kundaje, MM Hoffman
Nucleic Acids Research 46 (20), e120, 2018
A general framework for interrogation of mRNA stability programs identifies RNA-binding proteins that govern cancer transcriptomes
G Perron, P Jandaghi, S Solanki, M Safisamghabadi, C Storoz, ...
Cell reports 23 (6), 1639-1650, 2018
Top considerations for creating bioinformatics software documentation
M Karimzadeh, MM Hoffman
Briefings in Bioinformatics 19 (4), 693–699, 2017
Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome
M Karimzadeh, MM Hoffman
bioRxiv, 10.1101/168419, 2018
Massively multiplex single-molecule oligonucleosome footprinting
NJ Abdulhay, CP McNally, LJ Hsieh, S Kasinathan, A Keith, LS Estes, ...
Elife 9, e59404, 2020
Analysis of clonal evolution in colorectal cancer.
DM Graham, M Arseneault, MA Sukhai, L Letourneau, M Karimzadeh, ...
Journal of Clinical Oncology 32 (15_suppl), 3510-3510, 2014
Experimental and natural evidence of SARS-CoV-2 infection-induced activation of type I interferon responses
A Banerjee, N El-Sayes, P Budylowski, D Richard, H Maan, J Aguiar, ...
bioRxiv, 2020
Aberration hubs in protein interaction networks highlight actionable targets in cancer
M Karimzadeh, P Jandaghi, AI Papadakis, S Trainor, J Rung, ...
Oncotarget 9 (38), 25166-25180, 2018
Semi-automated genome annotation using epigenomic data and Segway
EG Roberts, M Mendez, C Viner, M Karimzadeh, R Chan, R Ancar, ...
bioRxiv, 080382, 2016
Early temporal dynamics of cellular responses to SARS-CoV-2
A Banerjee, P Budylowski, D Richard, H Maan, JA Aguiar, N El-Sayes, ...
bioRxiv, 2020
Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease
M Sugiyama, H Cui, SR Dar'ya, M Karimzadeh, E Rujas, H Maan, S Hayat, ...
bioRxiv, 2021
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NJ Abdulhay, CP McNally, LJ Hsieh, S Kasinathan, A Keith, LS Estes, ...
eLife 9, 2020
Viral integration transforms chromatin to drive oncogenesis
M Karimzadeh, C Arlidge, A Rostami, M Lupien, SV Bratman, ...
bioRxiv, 2020
Investigating enrichment patterns of cancer genomic aberrations in protein interaction networks
M Karimzadeh
Master's thesis, 2015
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