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Ali Sharifi-Zarchi
Ali Sharifi-Zarchi
Assistant Prof. of Bioinformatics and Artificial Intelligence, Sharif University of Technology
Verified email at sharif.ir
Title
Cited by
Cited by
Year
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
2442016
DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism
A Sharifi-Zarchi, D Gerovska, K Adachi, M Totonchi, H Pezeshk, RJ Taft, ...
BMC genomics 18, 1-21, 2017
1272017
A universal and robust integrated platform for the scalable production of human cardiomyocytes from pluripotent stem cells
H Fonoudi, H Ansari, S Abbasalizadeh, MR Larijani, S Kiani, ...
Stem cells translational medicine 4 (12), 1482-1494, 2015
1232015
Inhibition of TGFβ signaling promotes ground state pluripotency
SN Hassani, M Totonchi, A Sharifi-Zarchi, S Mollamohammadi, M Pakzad, ...
Stem Cell Reviews and Reports 10, 16-30, 2014
802014
Treatment of human embryonic stem cells with different combinations of priming and inducing factors toward definitive endoderm
Y Tahamtani, M Azarnia, A Farrokhi, A Sharifi-Zarchi, N Aghdami, ...
Stem cells and development 22 (9), 1419-1432, 2013
502013
Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis
E Karimizadeh, A Sharifi-Zarchi, H Nikaein, S Salehi, B Salamatian, ...
BMC medical genomics 12, 1-12, 2019
472019
Machine learning and network analysis of molecular dynamics trajectories reveal two chains of red/ox-specific residue interactions in human protein disulfide isomerase
R Karamzadeh, MH Karimi-Jafari, A Sharifi-Zarchi, H Chitsaz, ...
Scientific reports 7 (1), 3666, 2017
442017
DeePathology: deep multi-task learning for inferring molecular pathology from cancer transcriptome
B Azarkhalili, A Saberi, H Chitsaz, A Sharifi-Zarchi
Scientific reports 9 (1), 16526, 2019
412019
PIAS2-mediated blockade of IFN-β signaling: a basis for sporadic Parkinson disease dementia
J Magalhaes, E Tresse, P Ejlerskov, E Hu, Y Liu, A Marin, A Montalant, ...
Molecular psychiatry 26 (10), 6083-6099, 2021
392021
Small RNA sequencing reveals Dlk1-Dio3 locus-embedded microRNAs as major drivers of ground-state pluripotency
S Moradi, A Sharifi-Zarchi, A Ahmadi, S Mollamohammadi, A Stubenvoll, ...
Stem cell reports 9 (6), 2081-2096, 2017
382017
Proteome analysis of ground state pluripotency
S Taleahmad, M Mirzaei, LM Parker, SN Hassani, S Mollamohammadi, ...
Scientific reports 5 (1), 17985, 2015
342015
Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians
Y An, A Kawaguchi, C Zhao, A Toyoda, A Sharifi-Zarchi, SA Mousavi, ...
Zoological letters 4, 1-12, 2018
322018
Downregulation of extracellular matrix and cell adhesion molecules in cumulus cells of infertile polycystic ovary syndrome women with and without insulin resistance
F Hassani, S Oryan, P Eftekhari-Yazdi, M Bazrgar, A Moini, N Nasiri, ...
Cell Journal (Yakhteh) 21 (1), 35, 2019
302019
Whole genome sequencing of SARS-CoV2 strains circulating in Iran during five waves of pandemic
J Yavarian, A Nejati, V Salimi, NZ Shafiei Jandaghi, K Sadeghi, A Abedi, ...
PLoS One 17 (5), e0267847, 2022
292022
Comparative in vitro evaluation of human dental pulp and follicle stem cell commitment
R Karamzadeh, MB Eslaminejad, A Sharifi-Zarchi
Cell Journal (Yakhteh) 18 (4), 609, 2017
252017
The assessment of efficient representation of drug features using deep learning for drug repositioning
M Moridi, M Ghadirinia, A Sharifi-Zarchi, F Zare-Mirakabad
BMC bioinformatics 20, 1-11, 2019
232019
StrongestPath: a Cytoscape application for protein–protein interaction analysis
Z Mousavian, M Khodabandeh, A Sharifi-Zarchi, A Nadafian, A Mahmoudi
BMC bioinformatics 22, 1-14, 2021
212021
Down-regulation of miR-200c and up-regulation of miR-30c target both stemness and metastasis genes in breast cancer
M Rahimi, A Sharifi-Zarchi, N Zarghami, L Geranpayeh, M Ebrahimi, ...
Cell Journal (Yakhteh) 21 (4), 467, 2020
212020
Genome-wide DNA methylation profiling in ectopic and eutopic of endometrial tissues
N Barjaste, M Shahhoseini, P Afsharian, A Sharifi-Zarchi, ...
Journal of Assisted Reproduction and Genetics 36, 1743-1752, 2019
202019
Cell identity codes: understanding cell identity from gene expression profiles using deep neural networks
F Abdolhosseini, B Azarkhalili, A Maazallahi, A Kamal, SA Motahari, ...
Scientific reports 9 (1), 2342, 2019
192019
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