| ButterflyNet: a mobile capture and access system for field biology research R Yeh, C Liao, S Klemmer, F Guimbretière, B Lee, B Kakaradov, ... Proceedings of the SIGCHI conference on Human Factors in computing systems …, 2006 | 318 | 2006 |
| Chemoselective covalent coupling of oligonucleotide probes to self-assembled monolayers NK Devaraj, GP Miller, W Ebina, B Kakaradov, JP Collman, ET Kool, ... Journal of the American Chemical Society 127 (24), 8600-8601, 2005 | 283 | 2005 |
| Early transcriptional and epigenetic regulation of CD8+ T cell differentiation revealed by single-cell RNA sequencing B Kakaradov, J Arsenio, CE Widjaja, Z He, S Aigner, PJ Metz, B Yu, ... Nature immunology 18 (4), 422-432, 2017 | 232 | 2017 |
| Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene-expression analyses J Arsenio, B Kakaradov, PJ Metz, SH Kim, GW Yeo, JT Chang Nature immunology 15 (4), 365-372, 2014 | 228 | 2014 |
| Paternally inherited cis-regulatory structural variants are associated with autism WM Brandler, D Antaki, M Gujral, ML Kleiber, J Whitney, MS Maile, ... Science 360 (6386), 327-331, 2018 | 200 | 2018 |
| Error correction of high-throughput sequencing datasets with non-uniform coverage P Medvedev, E Scott, B Kakaradov, P Pevzner Bioinformatics 27 (13), i137, 2011 | 166 | 2011 |
| Single-cell alternative splicing analysis with expedition reveals splicing dynamics during neuron differentiation Y Song, OB Botvinnik, MT Lovci, B Kakaradov, P Liu, JL Xu, GW Yeo Molecular cell 67 (1), 148-161. e5, 2017 | 165 | 2017 |
| Profiling of short-tandem-repeat disease alleles in 12,632 human whole genomes H Tang, EF Kirkness, C Lippert, WH Biggs, M Fabani, E Guzman, ... The American Journal of Human Genetics 101 (5), 700-715, 2017 | 154 | 2017 |
| Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology C Bardy, M Van Den Hurk, B Kakaradov, JA Erwin, BN Jaeger, ... Molecular psychiatry 21 (11), 1573-1588, 2016 | 149 | 2016 |
| A complex-based reconstruction of the Saccharomyces cerevisiae interactome H Wang, B Kakaradov, SR Collins, L Karotki, D Fiedler, M Shales, ... Molecular & Cellular Proteomics 8 (6), 1361-1381, 2009 | 115 | 2009 |
| The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome MC Washburn, B Kakaradov, B Sundararaman, E Wheeler, S Hoon, ... Cell reports 6 (4), 599-607, 2014 | 72 | 2014 |
| Transcriptome-wide off-target effects of steric-blocking oligonucleotides EM Holgersen, S Gandhi, Y Zhou, J Kim, B Vaz, J Bogojeski, M Bugno, ... nucleic acid therapeutics 31 (6), 392-403, 2021 | 51 | 2021 |
| Regulation of asymmetric division and CD8+ T lymphocyte fate specification by protein kinase Cζ and protein kinase Cλ/ι PJ Metz, J Arsenio, B Kakaradov, SH Kim, KA Remedios, K Oakley, ... The Journal of Immunology 194 (5), 2249-2259, 2015 | 50 | 2015 |
| Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data B Kakaradov, HY Xiong, LJ Lee, N Jojic, BJ Frey BMC bioinformatics 13 (Suppl 6), S11, 2012 | 41 | 2012 |
| Reply to: "CD8+ T cell diversification by asymmetric cell division" J Arsenio, B Kakaradov, PJ Metz, GW Yeo, JT Chang Nature immunology 16 (9), 893-894, 2015 | 12 | 2015 |
| Paternally inherited noncoding structural variants contribute to autism WM Brandler, D Antaki, M Gujral, ML Kleiber, MS Maile, O Hong, ... bioRxiv, 102327, 2017 | 10 | 2017 |
| ATP7B variant c.1934T > G p.Met645Arg causes Wilson disease by promoting exon 6 skipping D Merico, C Spickett, M O’Hara, B Kakaradov, AG Deshwar, P Fradkin, ... NPJ genomic medicine 5 (1), 16, 2020 | 8 | 2020 |
| SeeSite: Efficiently Finding Co-occurring Splice Sites and Exon Splicing Enhancers C Lo, B Kakaradov, D Lokshtanov, C Boucher arXiv preprint arXiv:1206.5846, 2012 | 7* | 2012 |
| Comprehensive analysis of tumor NGS data to demonstrate pathways pointing to therapeutic targeting options. S Krishnan, A Perlina, A Thomas, B Kakaradov, W Delport, RB Nehring, ... Journal of Clinical Oncology 35 (15_suppl), e23153-e23153, 2017 | | 2017 |
| Tumor profiling from whole-genome and whole transcriptome sequencing to uncover gene fusions and structural variations in clinically relevant cancer genes. AE Gylfe, E Shinbrot, B Kakaradov, W Delport, CK Lau, S Krishnan, ... Journal of Clinical Oncology 35 (15_suppl), e23118-e23118, 2017 | | 2017 |
Gene Yeo PhD MBAProfessor of Cellular and Molecular Medicine at UC San DiegoVerified email at ucsd.edu
