| N-Myc drives neuroendocrine prostate cancer initiated from human prostate epithelial cells JK Lee, JW Phillips, BA Smith, JW Park, T Stoyanova, EF McCaffrey, ... Cancer cell 29 (4), 536-547, 2016 | 356 | 2016 |
| MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure L Keren, M Bosse, S Thompson, T Risom, K Vijayaragavan, E McCaffrey, ... Science advances 5 (10), eaax5851, 2019 | 271 | 2019 |
| Single-cell metabolic profiling of human cytotoxic T cells FJ Hartmann, D Mrdjen, E McCaffrey, DR Glass, NF Greenwald, ... Nature biotechnology 39 (2), 186-197, 2021 | 221 | 2021 |
| Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma T Risom, DR Glass, I Averbukh, CC Liu, A Baranski, A Kagel, ... Cell 185 (2), 299-310. e18, 2022 | 196 | 2022 |
| The immunoregulatory landscape of human tuberculosis granulomas EF McCaffrey, M Donato, L Keren, Z Chen, A Delmastro, MB Fitzpatrick, ... Nature immunology 23 (2), 318-329, 2022 | 123 | 2022 |
| Combined protein and nucleic acid imaging reveals virus-dependent B cell and macrophage immunosuppression of tissue microenvironments S Jiang, CN Chan, X Rovira-Clavé, H Chen, Y Bai, B Zhu, E McCaffrey, ... Immunity 55 (6), 1118-1134. e8, 2022 | 51 | 2022 |
| Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering CC Liu, NF Greenwald, A Kong, EF McCaffrey, KX Leow, D Mrdjen, ... Nature Communications 14 (1), 4618, 2023 | 22 | 2023 |
| Spatial epitope barcoding reveals clonal tumor patch behaviors X Rovira-Clavé, AP Drainas, S Jiang, Y Bai, M Baron, B Zhu, AE Dallas, ... Cancer Cell 40 (11), 1423-1439. e11, 2022 | 21 | 2022 |
| Multiplexed ion beam imaging: insights into pathobiology CC Liu, EF McCaffrey, NF Greenwald, E Soon, T Risom, K Vijayaragavan, ... Annual Review of Pathology: Mechanisms of Disease 17, 403-423, 2022 | 20 | 2022 |
| Multiplexed imaging of human tuberculosis granulomas uncovers immunoregulatory features conserved across tissue and blood EF McCaffrey, M Donato, L Keren, Z Chen, M Fitzpatrick, V Jojic, ... Biorxiv, 2020.06. 08.140426, 2020 | 17 | 2020 |
| Single-cell spatial proteomic imaging for human neuropathology K Vijayaragavan, BJ Cannon, D Tebaykin, M Bossé, A Baranski, ... Acta Neuropathologica Communications 10 (1), 158, 2022 | 14 | 2022 |
| Loss-of-function mutations in Dnmt3a and Tet2 lead to accelerated atherosclerosis and concordant macrophage phenotypes PJ Rauch, J Gopakumar, AJ Silver, D Nachun, H Ahmad, M McConkey, ... Nature Cardiovascular Research 2 (9), 805-818, 2023 | 12 | 2023 |
| Multiplexed imaging reveals an IFN-γ-driven inflammatory state in nivolumab-associated gastritis S Ferrian, CC Liu, EF McCaffrey, R Kumar, TS Nowicki, DW Dawson, ... Cell Reports Medicine 2 (10), 2021 | 12 | 2021 |
| Multiplexed single-cell metabolic profiles organize the spectrum of cytotoxic human T cells FJ Hartmann, D Mrdjen, E McCaffrey, DR Glass, NF Greenwald, ... BioRxiv, 2020.01. 17.909796, 2020 | 9 | 2020 |
| Virus-dependent immune conditioning of tissue microenvironments S Jiang, CN Chan, X Rovira-Clave, H Chen, Y Bai, B Zhu, E McCaffrey, ... Biorxiv, 2021.05. 21.444548, 2021 | 8 | 2021 |
| Rhesus macaque CODEX multiplexed immunohistochemistry panel for studying immune responses during Ebola infection S Jiang, N Mukherjee, RS Bennett, H Chen, J Logue, B Dighero-Kemp, ... Frontiers in immunology 12, 729845, 2021 | 7 | 2021 |
| Author Correction: The immunoregulatory landscape of human tuberculosis granulomas EF McCaffrey, M Donato, L Keren, Z Chen, A Delmastro, MB Fitzpatrick, ... Nature immunology 23 (5), 814, 2022 | 5 | 2022 |
| MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure. Sci. Adv. 2019; 5, eaax5851 L Keren, M Bosse, S Thompson, T Risom, K Vijayaragavan, E McCaffrey | 4 | |
| MIBI-TOF: a multiplexed imaging platform relates cellular phenotypes and tissue structure. Sci Adv. 2019; 5 (10): eaax5851 L Keren, M Bosse, S Thompson, T Risom, K Vijayaragavan, E McCaffrey, ... | 4 | |
| Spatial proteomics reveals human microglial states shaped by anatomy and neuropathology D Mrdjen, M Amouzgar, B Cannon, C Liu, A Spence, E McCaffrey, ... Research Square, 2023 | 3 | 2023 |
