| The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing PJ Keeling, F Burki, HM Wilcox, B Allam, EE Allen, LA Amaral-Zettler, ... PLoS Biol 12 (6), e1001889, 2014 | 1006 | 2014 |
| Metabolic engineering of lipid catabolism increases microalgal lipid accumulation without compromising growth EM Trentacoste, RP Shrestha, SR Smith, C Glé, AC Hartmann, ... Proceedings of the National Academy of Sciences 110 (49), 19748-19753, 2013 | 459 | 2013 |
| The place of diatoms in the biofuels industry M Hildebrand, AK Davis, SR Smith, JC Traller, R Abbriano Biofuels 3 (2), 221-240, 2012 | 289 | 2012 |
| Probing the evolution, ecology and physiology of marine protists using transcriptomics DA Caron, H Alexander, AE Allen, JM Archibald, EV Armbrust, C Bachy, ... Nature Reviews Microbiology 15 (1), 6-20, 2017 | 188 | 2017 |
| Comparative analysis of diatom genomes reveals substantial differences in the organization of carbon partitioning pathways SR Smith, RM Abbriano, M Hildebrand Algal Research 1 (1), 2-16, 2012 | 135 | 2012 |
| Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation SR Smith, JTF Gillard, AB Kustka, JP McCrow, JH Badger, H Zheng, ... PLoS genetics 12 (12), e1006490, 2016 | 128 | 2016 |
| Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype JC Traller, SJ Cokus, DA Lopez, O Gaidarenko, SR Smith, JP McCrow, ... Biotechnology for biofuels 9 (1), 1-20, 2016 | 113 | 2016 |
| Metabolic and cellular organization in evolutionarily diverse microalgae as related to biofuels production M Hildebrand, RM Abbriano, JEW Polle, JC Traller, EM Trentacoste, ... Current Opinion in Chemical Biology, 2013 | 112 | 2013 |
| Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom SR Smith, CL Dupont, JK McCarthy, JT Broddrick, M Oborník, A Horák, ... Nature Communications 10 (1), 1-14, 2019 | 111 | 2019 |
| Nitrate reductase knockout uncouples nitrate transport from nitrate assimilation and drives repartitioning of carbon flux in a model pennate diatom JK McCarthy, SR Smith, JP McCrow, M Tan, H Zheng, K Beeri, R Roth, ... The Plant Cell 29 (8), 2047-2070, 2017 | 91 | 2017 |
| Transcript level coordination of carbon pathways during silicon starvation‐induced lipid accumulation in the diatom Thalassiosira pseudonana SR Smith, C Glé, RM Abbriano, JC Traller, A Davis, E Trentacoste, ... New Phytologist 210 (3), 890-904, 2016 | 74 | 2016 |
| Cross‐compartment metabolic coupling enables flexible photoprotective mechanisms in the diatom Phaeodactylum tricornutum JT Broddrick, N Du, SR Smith, Y Tsuji, D Jallet, MA Ware, G Peers, ... New Phytologist, 2019 | 49 | 2019 |
| Clarification of photorespiratory processes and the role of malic enzyme in diatoms A Davis, R Abbriano, SR Smith, M Hildebrand Protist 168 (1), 134-153, 2017 | 39 | 2017 |
| Applications of Imaging Flow Cytometry for Microalgae M Hildebrand, A Davis, R Abbriano, HR Pugsley, JC Traller, SR Smith, ... Imaging Flow Cytometry, 47-67, 2015 | 29 | 2015 |
| Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom A Oliver, S Podell, A Pinowska, JC Traller, SR Smith, R McClure, ... Scientific Reports 11 (1), 1-14, 2021 | 14 | 2021 |
| The Importance of Protein Phosphorylation for Signaling and Metabolism in Response to Diel Light Cycling and Nutrient Availability in a Marine Diatom MH Tan, SR Smith, KK Hixson, J Tan, JK McCarthy, AB Kustka, AE Allen Biology 9 (7), 155, 2020 | 9 | 2020 |
| Flow cytometric analysis of phytoplankton viability in Elkhorn Slough, California. SR Smith San José State University, 2009 | 3 | 2009 |
| Nitrogen and Iron Availability Drive Metabolic Remodeling and Natural Selection of Diverse Phytoplankton during Experimental Upwelling BC Kolody, SR Smith, L Zeigler Allen, JP McCrow, A Moustafa, D Shi, ... mSystems, e00729-22, 2022 | 2 | 2022 |
| Comparative and Functional Genomics of Macronutrient Utilization in Marine Diatoms SR Smith, AE Allen The Molecular Life of Diatoms, 529-566, 2022 | 1 | 2022 |
| Constraint-Based Modeling of Diatoms Metabolism and Quantitative Biology Approaches M Kumar, C Zuniga, JD Tibocha-Bonilla, SR Smith, J Coker, AE Allen, ... The Molecular Life of Diatoms, 775-808, 2022 | 1 | 2022 |
Andrew E. AllenJ. Craig Venter Institute, Scripps Insitutuon of Oceanography (UCSD)Verified email at jcvi.org
